View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20904_low_7 (Length: 342)
Name: NF20904_low_7
Description: NF20904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20904_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 43989992 - 43990302
Alignment:
| Q |
16 |
atgatggatacatggaagcaggcaactaagaataccatgttcaatgaatggcttaatgaatgctggaaagagagtccagaatctatatcacagacagaaa |
115 |
Q |
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| T |
43989992 |
atgatggatacatggaagcaggcaactaagaataccatgttcaatgaatggcttaatgaatgctggaaagagagtccagaatctatatcacagacagaaa |
43990091 |
T |
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| Q |
116 |
catcacattgtagcacgtctcatagaggtttctaattgcttatagcttctttcttttttgtggactttgtgggatggatagtggatactatagtgtgttt |
215 |
Q |
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| T |
43990092 |
catcacattgtagcacgtctcatagaggtttctaattgcttatagcttctttcatttttgtggactttgtgggatggatagtggatactatagtgtgttt |
43990191 |
T |
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| Q |
216 |
tgttattttccaggttctgagtatcaggaatgcttggactacaatgatcaaatgtttaagccaggcttgaaagacatattactgatgaatcagaatgaac |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||| |
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| T |
43990192 |
tgttattttccaggttctgagtatcaggaatgcttggactacaatgatcaaatgtttaagccaggttggaaagacatattccggatgaatcagaatgaac |
43990291 |
T |
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| Q |
316 |
ttgcgtcagag |
326 |
Q |
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| T |
43990292 |
ttgagtcagag |
43990302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 31310406 - 31310541
Alignment:
| Q |
16 |
atgatggatacatggaagcaggcaactaagaataccatgttcaatgaatggcttaatgaatgctggaaagagagtccagaatctatatcacagacagaaa |
115 |
Q |
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|||||||| |||||||| || ||||||||||| || |||||||| |||||||| |||||| ||| || ||||||||||| ||||| |||||||||||||| |
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| T |
31310406 |
atgatggacacatggaaacaagcaactaagaacacaatgttcaacgaatggctaaatgaaagcttgatagagagtccaggatctacatcacagacagaaa |
31310505 |
T |
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| Q |
116 |
catcacattgtagcacgtctcatagaggtttctaat |
151 |
Q |
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| T |
31310506 |
catcagaacatagcacttctcaaagaggtctctaat |
31310541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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