View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20904_low_8 (Length: 310)
Name: NF20904_low_8
Description: NF20904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20904_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 180 - 292
Target Start/End: Complemental strand, 14670649 - 14670537
Alignment:
| Q |
180 |
cacactagactactatttgttggatgctgctataaatgtcacacacagttgcacgctgtgagcatatctcaactgtagatatgagatctgtcggtcagat |
279 |
Q |
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| T |
14670649 |
cacactagactactatttgttggatgctgctataaatgttacacgcagttgcacgctctgagcacatctcaactgtagatatgagatctgtcggtcagac |
14670550 |
T |
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| Q |
280 |
ttaatcacagttt |
292 |
Q |
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| T |
14670549 |
ttaatcacagttt |
14670537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 14670812 - 14670713
Alignment:
| Q |
1 |
aaatcacaagactaatattcatcactgataaatattaaataaaataggacaaatatttttctgttatgtatnnnnnnnncatgagacatatgtttctcac |
100 |
Q |
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| T |
14670812 |
aaatcacaagactaatatttatcacttataaatattaaataaaataggacaaatatttttctgttatatataaaaaaaacatgagacatatgtttctcac |
14670713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 22042129 - 22042197
Alignment:
| Q |
226 |
agttgcacgctgtgagcatatctcaactgtagatatgagatctgtcgg-tcaga-tttaatcacagtttt |
293 |
Q |
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| T |
22042129 |
agttgcacgctgt-agcatatctcaatcgtagatatgagatcgatcggttcagattttaatcacagtttt |
22042197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 17672713 - 17672781
Alignment:
| Q |
1 |
aaatcacaagactaatattcatcactgataaatattaaataaaataggacaaatatttttctgttatgtat |
71 |
Q |
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| T |
17672713 |
aaatcacaagactaatattcatcactgataaatat--aaaaaaataggacaaatatttttctgttatgtat |
17672781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 293
Target Start/End: Complemental strand, 13136759 - 13136670
Alignment:
| Q |
204 |
tgctgctataaatgtcacacacagttgcacgctgtgagcatatctcaactgtagatatgagatctgtcggt-cagatttaatcacagtttt |
293 |
Q |
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| T |
13136759 |
tgctgctgtaaatattacacgcagttacacgcggt-agcacatctcaaccgtagatatgagatccgtcggtccagatttaatcacagtttt |
13136670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 25452740 - 25452673
Alignment:
| Q |
225 |
cagttgcacgctgtgagcatatctcaactgtagatatgagatctgtcggt-cagatttaatcacagttt |
292 |
Q |
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| T |
25452740 |
cagttgcacactgt-agcatatctcaacagtagatatgagatccgtcggtccagatttaatcacagttt |
25452673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 48766374 - 48766455
Alignment:
| Q |
207 |
tgctataaatgtcacacacagttgcacgctgtgagcatatctcaactgtagatatgagatctgtcgg-tcagatttaatcaca |
288 |
Q |
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| T |
48766374 |
tgctgtaaatattacacgcagttgcacgctgt-agcacatctcaaccgtagatatgagatccgtcggttcagatttaatcaca |
48766455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 38953679 - 38953607
Alignment:
| Q |
220 |
acacacagttgcacgctgtgagcatatctcaactgtagatatgagatctgtcggtc-agatttaatcacagttt |
292 |
Q |
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| T |
38953679 |
acacgcagttgcacgctgt-agcacatctcagccgtaaatatgagatccgtcggtccagatttaatcacagttt |
38953607 |
T |
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