View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_high_13 (Length: 424)
Name: NF20905_high_13
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 414
Target Start/End: Original strand, 46636307 - 46636706
Alignment:
| Q |
15 |
aatttcaaccatgcttaaatagaccatgtagccaagctttcctccccatgaattcttcttgtggtaattcctccctttggattttattacctactctacc |
114 |
Q |
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| T |
46636307 |
aatttcaaccatgcttaaatagaccatgtagccaagctttcctccccatgaattcttcttgtggtaattccttcccatggattttattacctactctacc |
46636406 |
T |
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| Q |
115 |
gtcttcagtttaactaattatgaagacttggcttttattttca--gtgattttggaagaaactgaattacacaaaattttatagtagttgacaataacac |
212 |
Q |
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| T |
46636407 |
gtcttcagtttaactaattatgaagacttggcttttattttcacagtgattttggaagaaactgaattacacaaaattttatagtagttgacaataaaac |
46636506 |
T |
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| Q |
213 |
atctatatatgccacttgaataagttgaattgcataataaaaaatattgaatgtagctaggcaacatatatatgcagaaaatttgctagaggaggaaaat |
312 |
Q |
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| T |
46636507 |
atctatatatgccacttgaataagttgaattgcataataaaaaatgttgaatgtaactaggcaacatatatatgcagaaaatttgctagaggaggaaaat |
46636606 |
T |
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| Q |
313 |
gnnnnnnnnnntactaagacatgaaagctacttgaacaacagggacatatggaattgaaaagtgtctaaataccatcaatgttagttctaccctgatgat |
412 |
Q |
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| T |
46636607 |
g--aaaaaaaatactaagacatgaaagctacttgaacaatagggacatatggaattgaaaagtgtcgaaataccatcaatgttagttctaccctgatgat |
46636704 |
T |
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