View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20905_high_18 (Length: 382)
Name: NF20905_high_18
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 37 - 374
Target Start/End: Original strand, 971954 - 972290
Alignment:
| Q |
37 |
tcttgtatgactttctctgaagcctccagctcaaacagtttctcctctatcatacgctaattagtataaagtcctgtcaaatattttacaacattcagcg |
136 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
971954 |
tcttgcatgactttatctgaagcctccagctcaaacagtttctcctcaatgatacgctaattagtataaagtcctgtcaaatattttataacattcagca |
972053 |
T |
|
| Q |
137 |
tagagtttatatatcattgcaacagatgattatatatcatatcagtgacctggcctggctgctagtgcatagaaagttagtattgtgaaagtgaaagaga |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
972054 |
tagagtttatatatcattgcaacagatgattatatatcatatcagtgacctggcctggctgctagtgcatagaaagttagtattgtgaaagtgaaagaga |
972153 |
T |
|
| Q |
237 |
cgtgtatgagaaaccgaggcggagagaatgtgtaaaataatattacaaaaaacattttgaccacaaataaaattgggacggggcgggtaacccgagggtt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
972154 |
tgtgtatgagaaaccgaggcggagagaatgtgtaaaataatatta-aaaaaccattttgtccacaaataaaattgggacgggacgggtaacccgagggtt |
972252 |
T |
|
| Q |
337 |
aatccgaacccgatcactgtttcagttatgttcatctc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
972253 |
aatccgaacccgatcactgtttcagttatgttcatctc |
972290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 1028791 - 1028889
Alignment:
| Q |
14 |
taacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctccagctcaaacagtttctcctctatcatacgctaattagtataaagtcctg |
112 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
1028791 |
taacaaaccttaaacaaatgccttcttgtatgactttctctgaagcctccagctcaaacagtttctcctctatgatacactaattagtataaagtcctg |
1028889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 1011486 - 1011591
Alignment:
| Q |
14 |
taacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctccagctcaaacagtttctcctctatcatacgctaattagtataaagtcctgt |
113 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
1011486 |
taacaaaccttaaacaagtgccttcttgtatgactttctctgaagtctccagctcaaacagtttctcctctatgatacactaattagtataaagtcctgt |
1011585 |
T |
|
| Q |
114 |
caaata |
119 |
Q |
| |
|
||||| |
|
|
| T |
1011586 |
gaaata |
1011591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 971788 - 971851
Alignment:
| Q |
14 |
taacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctccagctcaaacagttt |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
971788 |
taacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctccagctcaaacagttt |
971851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 1009015 - 1009102
Alignment:
| Q |
32 |
atccttcttgtatgactttctctgaagcctccagctcaaacagtttctcctctatcatacgctaattagtataaagtcctgtcaaata |
119 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| |||||||||| | ||||| || ||||||||||||||||||||||| |
|
|
| T |
1009015 |
atccttcttgtatgactttatctgacgcctccagctcaaatagtttctccttgttgatacgttatttagtataaagtcctgtcaaata |
1009102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 991220 - 991304
Alignment:
| Q |
34 |
ccttcttgtatgactttctctgaagcctccagctcaaacagtttctcctctatcatacgctaattagtataaagtcctgtcaaata |
119 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| |||||||||||||| ||| |||||||| |||||||||||| ||| |||||| |
|
|
| T |
991220 |
ccttcttgtatgactttatctgaagcctt-agcttaaacagtttctcctatatgatacgctatttagtataaagtgctgccaaata |
991304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 22670523 - 22670445
Alignment:
| Q |
14 |
taacaaaccttaaaccaaatccttcttgtatgactttctctgaagcctccagctcaaacagtttctcctctatcatacg |
92 |
Q |
| |
|
||||||||||||||| | |||||||| |||||||||||||||||||||| |||||||| | |||||||||| ||||| |
|
|
| T |
22670523 |
taacaaaccttaaacacatgccttcttgaatgactttctctgaagcctccaactcaaacaatctctcctctattatacg |
22670445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 314
Target Start/End: Original strand, 5587086 - 5587196
Alignment:
| Q |
205 |
atagaaagttagtattgtgaaagtgaaagagacgtgtatgagaaaccgaggcggagagaatgtgtaaaataatatt-acaaaaaacattttgaccacaaa |
303 |
Q |
| |
|
||||||||||||||||||||||| |||| || | ||||| ||| ||||| | ||| || | |||||||||||||| | |||||| |||||| || |||| |
|
|
| T |
5587086 |
atagaaagttagtattgtgaaagagaaaaagtcatgtataagagaccgaaactgagtgagtatgtaaaataatattaaaaaaaaatattttgtcctcaaa |
5587185 |
T |
|
| Q |
304 |
taaaattggga |
314 |
Q |
| |
|
| ||||||||| |
|
|
| T |
5587186 |
ttaaattggga |
5587196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University