View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20905_high_3 (Length: 662)

Name: NF20905_high_3
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20905_high_3
NF20905_high_3
[»] scaffold0147 (1 HSPs)
scaffold0147 (1-644)||(19869-20512)


Alignment Details
Target: scaffold0147 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 644
Target Start/End: Complemental strand, 20512 - 19869
Alignment:
Q  1 aagaggagaagaaattgaaggtttatttttgtagtaggacacattcgcagctttcacagtttgtaaaggagttgagaaagacagtgtttgctgatgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  20512 aagaggagaagaaattgaaggtttatttttgtagtaggacacattcgcagctttcacagtttgtaaaggagttgaggaaaacggtgtttgctgatgaaat 20413  T
Q  101 gggtgttgtgagtttaggttccaggaaaaatctttgtattaatcaaggtatggaactttgcttaatctggaaagttattttttggtttccttttgattac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20412 gggtgttgtgagtttaggttccaggaaaaatctttgtattaatcaaggtatggaactttgcttaatctggaaagttattttttggtttccttttgattac 20313  T
Q  201 ttgattatgatcatgttgttacaaatgtttgtgttacagaggtacttgcacttggaaactcgtctcgcataaatgagagatgcttggaactccnnnnnnn 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  20312 ttgattatgatcatgttgttacaaatgtttgtgttacagaggtacttgcacttggaaactcgtctcgcataaatgagagatgcttggaactccaaaagaa 20213  T
Q  301 nnnnnnnnntgatgctacaaaagttaaggtgtgtggagtttggattttagaatatatactgtggtggtttggaacaacttcttagacactcatgaaaaca 400  Q
             ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20212 aaagaaaaatgatgctacaaaagttaaggtgtgtggagtttggattttagaatatagactgtggtggtttggaacaacttcttagacactcatgaaaaca 20113  T
Q  401 gaaatattaaaagaatattgcaatagatatgagcttttaaagtaatggcttcttgtattttgccttgcttttttcaaaagcacttttgtttaacttctgt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20112 gaaatattaaaagaatattgcaatagatatgagcttttaaagtaatggcttcttgtattttgccttgcttttttcaaaagcacttttgtttaacttctgt 20013  T
Q  501 taaaacataaacaagcttactcaaatttttgttagggaagaaagaactattaacttcttttgactgagaagctttcatacactagaaggtggtttaaact 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20012 taaaacataaacaagcttactcaaatttttgttagggaagaaagaactattagcttcttttgactgagaagctttcatacactagaaggtggtttaaact 19913  T
Q  601 gggctaaggatctacggatctattattgttcttttggtacaagc 644  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19912 gggctaaggatctacggatctattattgttcttttggtacaagc 19869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University