View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_high_30 (Length: 312)
Name: NF20905_high_30
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 36416741 - 36416446
Alignment:
| Q |
15 |
acaaacttcatgcatacatgtgcattgtgatgttctaaaatcctaaactcctaataaacaacnnnnnnnnn---tctagttgtttaatttgatttgattc |
111 |
Q |
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| T |
36416741 |
acaaacttcatgcatacatgtgcattgtgatgttctaaaatcctaaactcctaataaacaacaaaaaaaaaaaatctagttgtttaatttgatttgattc |
36416642 |
T |
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| Q |
112 |
tgtcacaatgccaagcaaactaaggaaggcaattggtgcagtaaaagaccaaacaagcattagcctagcaaaggtaacacatgctgcaaatcttgaggta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36416641 |
tgtcacaatgccaagcaaactaaggaaggcaattggtgcagtaaaagaccaaacaagcattagcctagcaaaggtaacacatgctgcaaatcttgaggta |
36416542 |
T |
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| Q |
212 |
acaattcttaaagcaacaacacatgataaaaatccaattgaagaacgttatgtgaatgaaattgtcaacatagtatcttccaacaaagcctatgct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36416541 |
acaattcttaaagcaacaacacatgataaaaatccaattgaagaacgttatgtgaatgaaattgtcaacatagtatcttccaacaaagcctatgct |
36416446 |
T |
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