View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20905_high_35 (Length: 278)
Name: NF20905_high_35
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_high_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 33520380 - 33520541
Alignment:
| Q |
11 |
cacagatcatattgatgctttaatttagagaaaaagctttgtttgttcatatgagttgatgatgctgtagttaggggagtttcccttagcaaacaattat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33520380 |
cacagatcatattgatgctttaatttagagaaaaagctttgtttgttcatatgagttgatgatgctgcagttaggggagtttcccttagcaaacaattat |
33520479 |
T |
|
| Q |
111 |
taaatgtaaatcgagtaaactgatccctaagtaatgatgtcaattctctccaaacccggacc |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33520480 |
taaatgtaaatcgagtaaactgatccctaagtaatgatgtcaattctctccaaacccggacc |
33520541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 33520569 - 33520630
Alignment:
| Q |
200 |
ataaaaagttgtgggttctatggttggttgtggttgagtgcatgtgtgtgtagggacttact |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33520569 |
ataaaaagttgtgggttctatggttggttgtggttgagtgcatgtgtgtgtagggacttact |
33520630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University