View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20905_high_42 (Length: 250)
Name: NF20905_high_42
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_high_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 40054736 - 40054500
Alignment:
| Q |
1 |
ttaaggaaaagggctttattgatgaaaagggatatatgaggaaagacggtcggaaaatgaaatggcaaaatattcttgacgagaggaaaaatctcttgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40054736 |
ttaaggaaaagggctttattgatgaaaagggatatatgaggaaagacggtcggaaaatgaaatggcaaaatattcttgacgagaggaaaaatctcttgat |
40054637 |
T |
|
| Q |
101 |
tgataaacatttgatccctcatatccaggaggagctaaaccttgcatttgcttaccatgagatgacgagtgtgcattgcgaccaaatttttaaatggttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40054636 |
tgataaacatttgatccctcatatccaggaggagctaaaccttgcattttcttaccatgagatgacgagtgtgcattccgaccaaatttttaaatggttt |
40054537 |
T |
|
| Q |
201 |
gaatctcatatgggctgattagaacttacaatgctct |
237 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40054536 |
gaatctcatattggctgattagaacttacaatgctct |
40054500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University