View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_high_46 (Length: 240)
Name: NF20905_high_46
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 45319180 - 45318972
Alignment:
| Q |
20 |
gtcactgttactgtgttccatggacacatttgtttcttcaaagggtgttttttcatttgttacttccttgatgtcaacaatatagttgggatctgcatgt |
119 |
Q |
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| T |
45319180 |
gtcactgttactgtgttccatggacacatttgtttcttcaaagggtgttttttcatttgttacttccttgatgtcaacaatatagttgggatctgcatgt |
45319081 |
T |
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| Q |
120 |
tttgaagctagaggagaagcatttgaacttcttcttgatttctttgtcccttccaacgaaattacaatttctcctgaaacattggttttcctttccctcc |
219 |
Q |
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| T |
45319080 |
tttgaagctagaggagaagcatttgaacttcttcttgatttctttgtcccttccaacgaaattacaatttctcctgaaacattggttttcctttccctcc |
45318981 |
T |
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| Q |
220 |
ttttctgtg |
228 |
Q |
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| T |
45318980 |
ttttctgtg |
45318972 |
T |
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