View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_high_53 (Length: 234)
Name: NF20905_high_53
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_high_53 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 35264668 - 35264470
Alignment:
| Q |
20 |
ccttcttctgtaacgctgtggtttttgcttcctctgcagacttccnnnnnnncatcctatttgctgcggcaaccgaacctatttctttttgaatgcatca |
119 |
Q |
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| T |
35264668 |
ccttcttctgtaacgctgtggtttttgcttcctctgcagacttcctttttttcatcctatttgctgcggcaaccgaacctatttctttttgaatgcatca |
35264569 |
T |
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| Q |
120 |
ttttaccaannnnnnnaaatatctgaccaatttgtttgttgctttacaactaaagatgcagttcttatttgaagacttgttgtctctacacatgttcat |
218 |
Q |
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| T |
35264568 |
ttttaccaatttttttaaatatctgaccaatttgtttgttactttacaactaaagatgcagttcttatttgaagacttgttgtctctacacatgttcat |
35264470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 35271998 - 35271802
Alignment:
| Q |
20 |
ccttcttctgtaacgctgtggtttttgcttcctctgcagacttccnnnnnnncatcctatttgctgcggcaaccgaacctatttctttttgaatgcatca |
119 |
Q |
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| T |
35271998 |
ccttcttctgtagcgctgcagtttttgcttaatctgcagactttccttttttgatcctaattgctttggcaacggaacctatatatttttgaatgcatca |
35271899 |
T |
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| Q |
120 |
ttttaccaannnnnnnaaatatctgaccaatttgtttgttgctttacaactaaagatgcagttcttatttgaagacttgttgtctctacacatgttc |
216 |
Q |
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| T |
35271898 |
ttttaccaaattttttaaatattagaccaatttgtttgttactttacaactaaagctatagttcttattttaagacttgttatttctacacatgttc |
35271802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 35148504 - 35148463
Alignment:
| Q |
148 |
aatttgtttgttgctttacaactaaagatgcagttcttattt |
189 |
Q |
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| T |
35148504 |
aatttgtttgttgccttacaactaaagacgcagttcctattt |
35148463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 36778397 - 36778252
Alignment:
| Q |
73 |
atcctatttgctgcggcaaccgaacctatttctttttgaatgcatcattttaccaannnnnnnaaatatctgaccaatttgtttgttgctttacaactaa |
172 |
Q |
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|||||| |||||| || ||||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| |
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| T |
36778397 |
atcctaattgctgtggtaaccgtacctatttatttttgaatgcatcattttaccaaattttttaaatatcagaccaatttgtttgttactttacaactaa |
36778298 |
T |
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| Q |
173 |
agatgcagttcttatttgaagacttgttgtctctacacatgttcat |
218 |
Q |
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| T |
36778297 |
agctgtggttcttattttaagacttgttatttctacatatgttcat |
36778252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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