View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_1 (Length: 811)
Name: NF20905_low_1
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 566 - 796
Target Start/End: Complemental strand, 9532999 - 9532776
Alignment:
| Q |
566 |
caaactttgcggttggttctccggataatgacttaaaactgcttaaaaaagaacagagtcaacaagttgaactttttctaaagtttcgttttctttgtca |
665 |
Q |
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| T |
9532999 |
caaactttgcggttggttctccggataatgacttaaaactgcttaaaaaagaacagagtcaacaagttgaactttttctaaagtttcgttttctttgtca |
9532900 |
T |
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| Q |
666 |
aaggtctaaccaataatacaccatcattattctaagttcattaccatatttgaaaatctcttttccaagggctgtttcaaatcatcaaatttggtacccc |
765 |
Q |
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| T |
9532899 |
aaggtctaaccaataatacaccatcatta-------ttcattaccatatttgaaaatctcttttccaagggctgtttcaaatcatcaaatttggtacccc |
9532807 |
T |
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| Q |
766 |
attgatataatgaacttccattgtaactttt |
796 |
Q |
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| T |
9532806 |
attgatataatgaacttccattgtaactttt |
9532776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 9533545 - 9533315
Alignment:
| Q |
10 |
atgaacgtatcataatgttttgtttgtgagcttggagagaaagggagaggacgggtttggaataaaggaaaaagcaagtggaaagaataga--------- |
100 |
Q |
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| T |
9533545 |
atgaacgtatcataatgttttgcttgtgagtttggagagaaagtgagaggacgggtttggaataaaggaaaaagcaagtggaaagaatagagaaagtcct |
9533446 |
T |
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| Q |
101 |
-agagatgaaggactttgaagagtttagttttcttcataatacgaaactcttctaatttggagggaactaaaagattatcgtgaatgaagtttttggagt |
199 |
Q |
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| T |
9533445 |
aagagagggaggattttgaaaagtttaatttttttcataatacgaaatccttctaatttggagggaactaaaaaattatcgtgaatgaagtttttggagt |
9533346 |
T |
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| Q |
200 |
ttatataaattcttaaaatttaatgtatgtt |
230 |
Q |
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| T |
9533345 |
ttatataaattcttaaaatttaatgtatgtt |
9533315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 317 - 484
Target Start/End: Complemental strand, 9533243 - 9533081
Alignment:
| Q |
317 |
tattttctcctatattttccacccaaaacctcgcttcgtcgtcactacaaactcccaatcaaaggccaattgtcatatatttttcttttacactaaagta |
416 |
Q |
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| T |
9533243 |
tattttctactatgttttccacccaaaacctcgcttcgccgtcactacaaactcccaatcaaaggccaattgtc-----tttttcttttacactaaagta |
9533149 |
T |
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| Q |
417 |
taaaagtgtcatatcatttggtgggtcggttcatgatgtattcataaattttttacaaatataaggtg |
484 |
Q |
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| T |
9533148 |
taaaagtgtcatatcatttgatgggtcggttcatgatctattcattaaaattttacaaatataaggtg |
9533081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 26772846 - 26772771
Alignment:
| Q |
28 |
tttgtttgtgagcttggagagaaagggagaggacgggtttggaataaaggaaaaagcaagtggaaagaatagaaga |
103 |
Q |
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| T |
26772846 |
tttgtttgcgagtttggagggaaagggagaggaaggcttaggaaaaaaggaatgagcaagtggaagaaatagaaga |
26772771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 42946743 - 42946697
Alignment:
| Q |
196 |
gagtttatataaattcttaaaatttaatgtatgttgttgtagtattc |
242 |
Q |
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| T |
42946743 |
gagtttatataaattcttcaaatttaatatatgttgttatactattc |
42946697 |
T |
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