View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_10 (Length: 473)
Name: NF20905_low_10
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_10 |
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| [»] scaffold0485 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 290 - 411
Target Start/End: Complemental strand, 19914038 - 19913917
Alignment:
| Q |
290 |
ttatattattatgtttctcgttggatattatttcacaaaaccatatataaattatttagacacacagaatgttgattttacttgttaatttcttaatcat |
389 |
Q |
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| T |
19914038 |
ttatattattatgtttctcgttgcatattatttcacaaaaccatatataaattatttagacacacaaaatgttgattttacttgtcaatctcttaatcat |
19913939 |
T |
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| Q |
390 |
ttaaaaaatgattgaaaaatta |
411 |
Q |
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| T |
19913938 |
ttcaaaaacgattgaaaaatta |
19913917 |
T |
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Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 220 - 432
Target Start/End: Complemental strand, 19937466 - 19937261
Alignment:
| Q |
220 |
agcttattcttgctaaattttattgtgagctgcaccttaatannnnnnnnnnnatggtaactgtacgttattatattattatgtttctcgttggatatta |
319 |
Q |
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| T |
19937466 |
agcttattcttgctgaattttattgtgaactgcacgttaatattttat-----atggcaattgtacgttattatataattaggtttctcgttgcatatta |
19937372 |
T |
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| Q |
320 |
tttcacaaaaccatatataaattatttagacacacagaatgttgattttacttgttaatttcttaatcatttaaaaaatgattgaaaaattaaataaata |
419 |
Q |
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| T |
19937371 |
tttcacaaaacaagatataaattatttagacataaat--tgttgattttacttgttaatctcttaatcatttcataaatgattgaaaaactaaataaata |
19937274 |
T |
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| Q |
420 |
tttttcttctgta |
432 |
Q |
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| T |
19937273 |
tttttcttttgta |
19937261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19915101 - 19915025
Alignment:
| Q |
1 |
aagagagcacaattatcttcattgccgtctatattttcagatgcatattaattatataatgagacaacgattaaaaa |
77 |
Q |
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| T |
19915101 |
aagagaggacgattatcttcattgtcgtctatattttcatatgcatattaactatataatgagacaacgattaaaaa |
19915025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 19914957 - 19914898
Alignment:
| Q |
123 |
tttgttttcagaaatgattcctactgaaatggttgcaagtaaatgttttagtgagttgaa |
182 |
Q |
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| T |
19914957 |
tttgtgttcagaaatgattcctactaaaatgcttgcaactaaatgttatagtgagttgaa |
19914898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 19914855 - 19914805
Alignment:
| Q |
196 |
attgtcttctggttggaacaacatagcttattcttgctaaattttattgtg |
246 |
Q |
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| T |
19914855 |
attgtcttccggttgcaaaaacatagcttattcttgctaaattttattgtg |
19914805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 423
Target Start/End: Original strand, 28850726 - 28850819
Alignment:
| Q |
334 |
atataaattatttagaca----cacagaatgttgattttacttgttaatttcttaatcatttaaaaaatgattgaaaaattaaataaatatttt |
423 |
Q |
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| T |
28850726 |
atataaattatttagacatagtcacaaaatgttaactttactttttaatcttttaattattttaaaaatgattgaaaaaataattcaatatttt |
28850819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0485 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0485
Description:
Target: scaffold0485; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 427
Target Start/End: Complemental strand, 6591 - 6558
Alignment:
| Q |
394 |
aaaatgattgaaaaattaaataaatatttttctt |
427 |
Q |
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| T |
6591 |
aaaatgattgaaaaattaattaaatatttttctt |
6558 |
T |
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