View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_11 (Length: 442)
Name: NF20905_low_11
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_11 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 39378295 - 39378722
Alignment:
| Q |
1 |
tcaagccatgagataaagaatgcaaagcttcaagattttcttggatcaagtgactcattaaggctaacattgagtgcattaaatgcaaaattatcatctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39378295 |
tcaagccatgagataaagaatgcaaagcttcaagattttcttagatcaagtgacacattaaggctaacattgagtgcattaaatgcaaaattatcatctt |
39378394 |
T |
|
| Q |
101 |
ttcgaggctggccgagtatgaacaaaaattggtttgcactttacaagatgcctttgcaagttcctaaagaagaccgggtgtatgctggtttatggggagg |
200 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
39378395 |
ttcgaggttggccgaatatgaacaaaaattggtttgcactttacaagatgcctttgcaagttcctaaagaagaccaggtgtatgctggtttatagggagg |
39378494 |
T |
|
| Q |
201 |
tacttttggctggcctcatgaaaaac-ttctcaaaacaagcttaaaaaggctctattctttcttttgctctcttactcggagtcaaaaggacaacaactt |
299 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39378495 |
tacttttggctggcctcatgaaaaaccttctcaaaacaagcttaaaaaggctctattctttcttttgctctcttactcggagtcaaaaggacaacaactt |
39378594 |
T |
|
| Q |
300 |
ctcattggaacaaaagtattggaaggaactcgctacgccttgcgtcctaatggttccgcaatgtttatagtgaatatcaacgagccttcatctgaaccat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39378595 |
ctcattggaacaaaagtattggaaggaactcgctacgccttgcgtcctaatggttccgcaatgtttatagtgaatatcaacgagccttcatctgaaccat |
39378694 |
T |
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| Q |
400 |
ttccttggaacactgatagggaatcatt |
427 |
Q |
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| T |
39378695 |
ttccttggaacactgatagggaatcatt |
39378722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 39395653 - 39396081
Alignment:
| Q |
1 |
tcaagccatgagataaagaatgcaaagcttcaagattttcttggatcaagtgactcattaaggctaacattgagtgcattaaatgcaaaattatcatctt |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39395653 |
tcaaaccatgagataaagaatgcaaagcttcaagactttcttagatcaagtgacacgttaatgctaacattgagtgcattaaatgcaaaattatcatctt |
39395752 |
T |
|
| Q |
101 |
ttcgaggctggccgagtatgaacaaaaattggtttgcactttacaagatgcctttgcaagttcctaaagaagaccgggtgtatgctggtttatggggagg |
200 |
Q |
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||| ||| ||||| | ||||||| |||||||| || ||| |||||||| ||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
39395753 |
ttccaggttggcccaatatgaaccccaattggttccgcctataccagatgcctctgcaagttcctaaagaagaccaagtatatgctggtttatggggagg |
39395852 |
T |
|
| Q |
201 |
tacttttggctggcctcatgaaaaa-cttctcaaaacaagcttaaaaaggctctattctttcttttgctctcttactcggagtcaaaaggacaacaactt |
299 |
Q |
| |
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|||| |||| ||||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||||| || | |||||| ||||||||||| ||| |
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| T |
39395853 |
tactcttggatggcctcctgaaaaatcttctcaaaacaagcctgaaaaggctctattctttcttttgctctcgtattgggagtcgaaaggacaacagctt |
39395952 |
T |
|
| Q |
300 |
ctcattggaacaaaagtattggaaggaactcgctacgccttgcgtcctaatggttccgcaatgtttatagtgaatatcaacgagccttcatctgaaccat |
399 |
Q |
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||||||||||||||| |||||||||| ||||||| || || | |||||||||||| ||||||||||||||||||||||| |||||||| ||||| || | |
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| T |
39395953 |
ctcattggaacaaaaatattggaaggcgctcgctatgcattacatcctaatggttcagcaatgtttatagtgaatatcaatgagccttcttctgatccgt |
39396052 |
T |
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| Q |
400 |
ttccttggaacactgatagggaatcattt |
428 |
Q |
| |
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|||||||| | ||||||||||| |||||| |
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| T |
39396053 |
ttccttgggaaactgatagggactcattt |
39396081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 95 - 428
Target Start/End: Complemental strand, 39055 - 38720
Alignment:
| Q |
95 |
catcttttcgaggct-ggccgagtatgaacaaaaattggtttgcactttacaagatgcctttgcaagttcctaaagaagaccgggtgtatgctggtttat |
193 |
Q |
| |
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||||||||||||| | ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| || |||||| || ||||||||||||| |
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| T |
39055 |
catcttttcgaggtttggccgcatatgaacaaaaattggtttgcactatacaagatgcctttgcaagttcctgaacaagaccaagtatatgctggtttat |
38956 |
T |
|
| Q |
194 |
ggggaggtacttttggctggcctcatgaaaaa-cttctcaaaacaagcttaaaaaggctctattctttcttttgctctcttactcggagtcaaaaggaca |
292 |
Q |
| |
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|||||||| | |||| ||||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||| ||| || | |||||| |||||||| |
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| T |
38955 |
ggggaggtgcgcttggatggcctcctgaaaaatcttctcaaaacaagcctgaaaaggctctattctttcttttgcactcgtattgggagtcgaaaggaca |
38856 |
T |
|
| Q |
293 |
acaacttctcattggaacaaaagtattggaaggaactcgctacgccttgcgtcctaatggttccgcaatgtttatagtgaatatcaacgagccttcatct |
392 |
Q |
| |
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||| |||||||||||||||||| |||||||||| ||||||| || || | |||||||||||| ||||||||||||||||||||||| || ||||| ||| |
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| T |
38855 |
acagcttctcattggaacaaaaatattggaaggcgctcgctatgcattacatcctaatggttcagcaatgtttatagtgaatatcaatgacccttcttct |
38756 |
T |
|
| Q |
393 |
gaaccatttccttggaacactgatagggaatcattt |
428 |
Q |
| |
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|| || ||||||||| | ||||||||||| |||||| |
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| T |
38755 |
gatccgtttccttgggaaactgatagggactcattt |
38720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 131 - 415
Target Start/End: Original strand, 44236080 - 44236365
Alignment:
| Q |
131 |
ggtttgcactttacaagatgcctttgcaagttcctaaagaagaccgggtgtatgctggtttatggggaggtacttttggctggcctc-atgaaaaacttc |
229 |
Q |
| |
|
||||||||||||||||| |||| |||| |||||| | | |||| | ||||| ||||||||||||||| ||||||||||||||| | |||| |||| |
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| T |
44236080 |
ggtttgcactttacaagctgccattgcgagttcccagtgccgaccaagaatatgccggtttatggggaggtgcttttggctggcctccaggaaagccttc |
44236179 |
T |
|
| Q |
230 |
tcaaaacaagcttaaaaaggctctattctttcttttgctctcttactcggagtcaaaaggacaacaacttctcattggaacaaaagtattggaaggaact |
329 |
Q |
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| || |||||| | ||||||| ||||||||||| | |||||||| ||||| | || |||||||||||||||| ||| ||| |||| ||||| || |
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| T |
44236180 |
tgaagacaagcctggaaaggctttattctttcttctcctctcttatgaggagtttcagggtcaacaacttctcattgcaaccaaaatattagaaggcaca |
44236279 |
T |
|
| Q |
330 |
cgctacgccttgcgtcctaatggttccgcaatgtttatagtgaatatcaacgagccttcatctgaaccatttccttggaacactga |
415 |
Q |
| |
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| ||| | ||||| ||||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
44236280 |
cactatgtcttgcaccctaatggttcggcaatgtttatagcgaatatcaacgagccttcgtctgaaccctttccttggaacactga |
44236365 |
T |
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