View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_12 (Length: 432)
Name: NF20905_low_12
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_12 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Complemental strand, 35838439 - 35838043
Alignment:
| Q |
13 |
tgaacatgtctaatgagcaagatgggtccttgattcagtaaattacaaaagcaaaactctggctaagtttgagtaaaaataggcattgactaagcaaaag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35838439 |
tgaacatgtctaatgagcaagatgggtccttgattcagtaaa---caaaagcaaaactctggctaagtttgagtaaaaataggcattgactaagcaaaag |
35838343 |
T |
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| Q |
113 |
aaataagcacgtagaaaataatagaagagattgatacaaaaatgataaaatgaaacaagtgcaaaacaacatttttgagtaacttttgaaatatctnnnn |
212 |
Q |
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| T |
35838342 |
aaataagcacgtagaaaataatagaagagattgatacaaaaataataaaatgaaacaagtgcaaaacaacatttttgagtaacttttgaaatatctaaaa |
35838243 |
T |
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| Q |
213 |
nnnntacacaacacggtttactatagtttttattctcgtgcaactatctcatcaacatcatatatattcatatttatatattggtttaaataaaaattga |
312 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35838242 |
aaaatacacaacacggtttactatagtttttattcttgtgcaactatctcatcagcatcatatatattcatatttatatattggtttaaataaaaattga |
35838143 |
T |
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| Q |
313 |
tagattcaatagtcaataaaattaaaattgatttactatgtcatatacaaattatacatcgaaaaatcatcttattgtcacacataattgaccaataacc |
412 |
Q |
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| T |
35838142 |
tagattcaatagtcaataaaattaaaattgatttactatgtcatatacaaattacacatcgaaaaatcatcttattgtcactcataattgaccaataacc |
35838043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 218 - 412
Target Start/End: Complemental strand, 176944 - 176746
Alignment:
| Q |
218 |
acacaacacggtttactatagttttta-ttctcgtgcaactatctcatcaacatcatatatattcatatttatatattggtttaaataaaaattgataga |
316 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
176944 |
acacaacacggtttactatagttttttcttctcgtgctactatctcatcaacatcatatatattcatatttatatactggtttaaataaaaattgataga |
176845 |
T |
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| Q |
317 |
ttcaatagtcaataaaattaaaattgatttactatgtcatatacaaattatacatcgaaaaatcatcttatt---gtcacacataattgaccaataacc |
412 |
Q |
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||| || ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
176844 |
ttcgatggtcaataaaattaaaattgatttactaagtcatatacaaattatacctcgaaaaatcatcttattatagtcacacataattgactaataacc |
176746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 293 - 412
Target Start/End: Original strand, 36306469 - 36306590
Alignment:
| Q |
293 |
ttggtttaaataaaaattgatagattcaatagtcaataaaattaaaattgatttactatgtcatatacaaattatacatcgaaaa--atcatcttattgt |
390 |
Q |
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||||||||||||||||||||||||||||||| | |||| ||||| ||||||||||||||||| ||||||||||||||||||||| ||| | |||| || |
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| T |
36306469 |
ttggtttaaataaaaattgatagattcaataatgaatacaattagaattgatttactatgtccgatacaaattatacatcgaaaattatcttattatagt |
36306568 |
T |
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| Q |
391 |
cacacataattgaccaataacc |
412 |
Q |
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| T |
36306569 |
cacacataattgaccaataacc |
36306590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 36303877 - 36303987
Alignment:
| Q |
72 |
tggctaagtttgagtaaaaataggcattgactaagcaaaagaaataagcacgtagaaaataatagaagagattgatacaaaaatgataaaatgaaacaag |
171 |
Q |
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||||||| ||| |||||| |||||||||||||||||| || |||||| |||||| ||||||||| ||||||| | ||||| | ||||||||||||||||| |
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| T |
36303877 |
tggctaaatttaagtaaatataggcattgactaagcacaa-aaataa-cacgtacaaaataataaaagagatggttacaatattgataaaatgaaacaag |
36303974 |
T |
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| Q |
172 |
tgcaaaacaacat |
184 |
Q |
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| T |
36303975 |
tgcaaaacaacat |
36303987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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