View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_13 (Length: 426)
Name: NF20905_low_13
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 20 - 416
Target Start/End: Original strand, 44849766 - 44850159
Alignment:
| Q |
20 |
ctatggacagtaatgcctcccccaaacttgagtcagagacatctttagagctcaaaccagaatctcaagtatctaagaaacggtgagttatgcttagaac |
119 |
Q |
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| T |
44849766 |
ctatggacagtaatgcctcccccaaacttgagtcagagacatctttagagctcaaaccagaatctcaagtatctaagaaacggtgagttatgcttagaac |
44849865 |
T |
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| Q |
120 |
atagagtttgatatttggtttggttattagcatgttttttaattttctagtttttggtaataaagtagtgatgttgctagctagcttgcatgttttatat |
219 |
Q |
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| T |
44849866 |
atagagtttgatatttggtttggttattagcatgttttttaattttctagtttttggtaa---agtagtgatgttgctagctagcttgcatgttttatat |
44849962 |
T |
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| Q |
220 |
atgttgtgcatgtctcaggaaaatggttgagaaaacggttgtgactgtgaggattggagagaatgttagcaaggtgaagaatgaaggacttccttcagat |
319 |
Q |
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| T |
44849963 |
atgttgtgcatgtctcaggaaaatggttgagaaaacggttgtgactgtgaggattggagagaatgttagcaaggtgaagaatgaaggacttccttcagat |
44850062 |
T |
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| Q |
320 |
ttttggtcttggaggaaatatggacaaaaaccaatcaaaggctctccatacccaaggtgtgcattcattccactagatatgataatcatgatgatgt |
416 |
Q |
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| T |
44850063 |
ttttggtcttggaggaaatatggacaaaaaccaatcaaaggctctccatacccaaggtgtgcattcattccactagatatgataatcatgatgatgt |
44850159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 29998879 - 29998944
Alignment:
| Q |
312 |
cttcagatttttggtcttggaggaaatatggacaaaaaccaatcaaaggctctccatacccaaggt |
377 |
Q |
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| T |
29998879 |
cttcagatatatgggcatggaggaaatatggacaaaaacctataaaagggtcaccatatccaaggt |
29998944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 10923935 - 10923887
Alignment:
| Q |
329 |
tggaggaaatatggacaaaaaccaatcaaaggctctccatacccaaggt |
377 |
Q |
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| T |
10923935 |
tggaggaaatatggtcaaaaaccaatcaaagggtcaccatatccaaggt |
10923887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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