View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_16 (Length: 411)
Name: NF20905_low_16
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 94 - 397
Target Start/End: Complemental strand, 34688487 - 34688184
Alignment:
| Q |
94 |
attaaatgtatatgcagtggggatccgacagtatatgaaagattttggagacaaacaggtgacaagagcacgatcataataccaggatggcaatccatga |
193 |
Q |
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| T |
34688487 |
attatatgtatatgcagtggggatccgacagtatatgaaagattttggagacaaacaggtgacaagagcacgatcataataccaggatggcaatccatga |
34688388 |
T |
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| Q |
194 |
gctatttttcggatgtgtcgaacatatgttggtttcttgaggcagagtttgcaaaggaggtagtgaggttgcacagagtggtcgggaatgcagtcacaga |
293 |
Q |
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| T |
34688387 |
gctatttttcggatgtgtcgaacatatgttggtttcttgaggcagagtttgcaaaggaggtagtgaggttgcacagagtggtcgggaatgcagtcacaga |
34688288 |
T |
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| Q |
294 |
aggacgtcacattgttgtagggacaggttcctctcaactttttcttgctgcactctatgctctctccccaaatcatgcatctcaaccaatcaacgttgtt |
393 |
Q |
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| T |
34688287 |
aggacgtcacattgttgtagggacaggttcctctcaactttttcttgctgcactctatgctctctccccaaatcatgcatctcaaccaatcaacgttgtt |
34688188 |
T |
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| Q |
394 |
tgtg |
397 |
Q |
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|||| |
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| T |
34688187 |
tgtg |
34688184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 34688616 - 34688527
Alignment:
| Q |
11 |
atgaactagtaaataaaaagcttgtttggtatggaacataataatgatctattttttaaattgtggtcaattgacttcaatcaattaaat |
100 |
Q |
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| T |
34688616 |
atgaactagtaaataaaaagcttgtttggtatggaacataataatgatctattttttaaattgtggtcaattgacttgaatcaattaaat |
34688527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 154 - 359
Target Start/End: Complemental strand, 43614605 - 43614400
Alignment:
| Q |
154 |
gacaagagcacgatcataataccaggatggcaatccatgagctatttttcggatgtgtcgaacatatgttggtttcttgaggcagagtttgcaaaggagg |
253 |
Q |
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| T |
43614605 |
gacaagaccacaataataataccaggatggcaatctatgagttatttttctgatccaacaagcatttgttggtttcttgagccagaattttcaaaggaag |
43614506 |
T |
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| Q |
254 |
tagtgaggttgcacagagtggtcgggaatgcagtcacagaaggacgtcacattgttgtagggacaggttcctctcaactttttcttgctgcactctatgc |
353 |
Q |
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| T |
43614505 |
tagtgaggttacataatgtggttggaaatgcagtaacacaaggtcgacacgttgttgttggaacaggttcatctcagttaattcttgctgctctttatgc |
43614406 |
T |
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| Q |
354 |
tctctc |
359 |
Q |
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|||||| |
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| T |
43614405 |
tctctc |
43614400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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