View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_17 (Length: 408)
Name: NF20905_low_17
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 14970929 - 14970670
Alignment:
| Q |
1 |
gaatatatcatggttaatcatgcaatttagcacattgttctaattagacgtttccatttacagctaagagagtatattgatgatacagaagattatatta |
100 |
Q |
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| T |
14970929 |
gaatatatcaaggttaatcatgcaatttagcacatagttctaattagacgtttccatttacagctaagagagtatattgatgatacagaagattatatta |
14970830 |
T |
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| Q |
101 |
atattcaggtaagtaattaactagtaatttatgactagtgcctatatattgattgatatttggtgaatggcttgtaatacaaatgaaatgtttatatttt |
200 |
Q |
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| T |
14970829 |
atattcaggtaagtaatt-----------tatgactagtacctatatattgattgatatttggtgaatggcttgtaatacaaatgaaatgtttatatttt |
14970741 |
T |
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| Q |
201 |
gcagatggacagctatcgaaatcagctgattcaggtgctattatatatcattctttctacgtaatgcatgt |
271 |
Q |
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| T |
14970740 |
gcagatggacaactatcgaaatcagctgattcaggtgctattatataccattctttctacgtaatgcatgt |
14970670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 315 - 389
Target Start/End: Complemental strand, 14970626 - 14970548
Alignment:
| Q |
315 |
aagtctttgaatatttgtcttta----tgcatctagagatatttcttatcgcaggagaactttctctaacattttatgc |
389 |
Q |
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| T |
14970626 |
aagtctttgaatatttgtctttaattatgcagctagagatatttcttatcgcaggagaactttctctatcattttatgc |
14970548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 14987975 - 14987910
Alignment:
| Q |
51 |
tttccatttacagctaagagagtatattgatgatacagaagattatattaatattcaggtaagtaa |
116 |
Q |
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| T |
14987975 |
tttctatttacagcttcgagggtacattgatgatacagaagattacattaatattcaggtaagtaa |
14987910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 387
Target Start/End: Complemental strand, 14987730 - 14987658
Alignment:
| Q |
315 |
aagtctttgaatatttgtctttatgcatctagagatatttcttatcgcaggagaactttctctaacattttat |
387 |
Q |
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| T |
14987730 |
aagtccttgaatatttttctttatgcagttagagatatttcttaactcagctgaactttctctagcattttat |
14987658 |
T |
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