View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20905_low_18 (Length: 389)

Name: NF20905_low_18
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20905_low_18
NF20905_low_18
[»] chr2 (25 HSPs)
chr2 (1-372)||(30147433-30147804)
chr2 (1-239)||(30279408-30279646)
chr2 (1-239)||(30171083-30171318)
chr2 (1-224)||(30029500-30029723)
chr2 (1-224)||(30223638-30223861)
chr2 (1-224)||(30103529-30103752)
chr2 (1-235)||(30790153-30790387)
chr2 (1-235)||(30251800-30252034)
chr2 (1-226)||(30068107-30068332)
chr2 (106-226)||(30022822-30022942)
chr2 (106-226)||(30037753-30037873)
chr2 (106-226)||(30081228-30081348)
chr2 (106-226)||(30107231-30107351)
chr2 (106-226)||(30119180-30119300)
chr2 (106-226)||(30133879-30133999)
chr2 (106-226)||(30231891-30232011)
chr2 (88-217)||(30184721-30184850)
chr2 (135-224)||(30092181-30092270)
chr2 (135-224)||(30114034-30114123)
chr2 (135-224)||(30128786-30128875)
chr2 (320-372)||(7696846-7696898)
chr2 (179-224)||(30102499-30102544)
chr2 (292-372)||(23192928-23193008)
chr2 (292-372)||(23606992-23607072)
chr2 (292-372)||(23618534-23618614)
[»] scaffold1156 (1 HSPs)
scaffold1156 (292-372)||(1491-1571)
[»] chr3 (4 HSPs)
chr3 (256-368)||(8133861-8133972)
chr3 (293-372)||(12847054-12847133)
chr3 (292-372)||(134619-134699)
chr3 (292-372)||(10168846-10168926)
[»] scaffold0178 (2 HSPs)
scaffold0178 (292-372)||(25019-25099)
scaffold0178 (292-372)||(30521-30601)
[»] scaffold0013 (3 HSPs)
scaffold0013 (291-372)||(117504-117585)
scaffold0013 (291-372)||(110676-110757)
scaffold0013 (291-372)||(125358-125439)
[»] chr1 (2 HSPs)
chr1 (287-372)||(21308372-21308457)
chr1 (287-372)||(22687095-22687180)
[»] scaffold0319 (1 HSPs)
scaffold0319 (292-372)||(8030-8110)
[»] scaffold0270 (1 HSPs)
scaffold0270 (292-372)||(23721-23801)
[»] scaffold0100 (1 HSPs)
scaffold0100 (328-372)||(6992-7036)
[»] scaffold0022 (1 HSPs)
scaffold0022 (292-372)||(31595-31675)
[»] chr6 (1 HSPs)
chr6 (322-372)||(26463073-26463123)
[»] scaffold0323 (1 HSPs)
scaffold0323 (292-372)||(2202-2282)
[»] scaffold0101 (1 HSPs)
scaffold0101 (292-372)||(48587-48667)
[»] scaffold0081 (1 HSPs)
scaffold0081 (292-368)||(46606-46682)
[»] scaffold0040 (1 HSPs)
scaffold0040 (292-372)||(39020-39100)
[»] chr4 (1 HSPs)
chr4 (292-372)||(14559261-14559341)


Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 30147804 - 30147433
Alignment:
Q  1 cagaaactaatgagtctcggcaaacgttcaagttcaagagaacgcaacttgggggacagaatcttgttgatctctttattagcttctgatgtttgcacag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30147804 cagaaactaatgagtctcggcaaacgttcaagttcaagagaacgcaacttgggggacagaatcttgttgatctctttattagcttctgatgtttgcacaa 30147705  T
Q  101 ctattatttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctc 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30147704 ctattatttctgtaatcattttgcaattagaaatttttatatcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctc 30147605  T
Q  201 acaacctttgacttcaataaattttaatctggtaagagaatggatattggaattagatgttgcaattctttctaaaagtttttcttttagtgttttagca 300  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30147604 acaacctttgacttcaatagattttaatctggtaagagaatggatattggaattacatgttgcaattctttctaaaagtttttcttttagtgttttagca 30147505  T
Q  301 gcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30147504 gcataataaacagtccgactaagatgtaaaggatcatatacagtttcaaagtacttttggaaagcttgaatt 30147433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30279646 - 30279408
Alignment:
Q  1 cagaaactaatgagtctcggcaaacgttcaagttcaagagaacgcaacttgggggacagaatcttgttgatctctttattagcttctgatgtttgcacag 100  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||    
T  30279646 cagaaactaatgagactgggcaaacgttcaagttcaagagaacgcaacttggggaacagaatcttgttgatctctgtattagcttccgatgtttgcacag 30279547  T
Q  101 ctattatttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctc 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30279546 ctattatttctgtaatcattttgcaatcagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttttc 30279447  T
Q  201 acaacctttgacttcaataaattttaatctggtaagaga 239  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  30279446 acaacctttgacttcaatagattttaatctggtaagaga 30279408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30171318 - 30171083
Alignment:
Q  1 cagaaactaatgagtctcggcaaacgttcaagttcaagagaacgcaacttgggggacagaatcttgttgatctctttattagcttctgatgtttgcacag 100  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||| || ||| ||| ||||| |||||  |||||||  ||||| ||| |||||||||    
T  30171318 cagaaactaatgagacatggcaaacgttcaagttcaagagaacgcaatttagggaacataatctggttgaattctttatcggcttcagatttttgcacag 30171219  T
Q  101 ctattatttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctc 200  Q
    |||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||   ||  |||||||||||    
T  30171218 ctacgatttctgtaatcattttgcaatcagaaatttttatttcaagaagttgaggaaggtctctaacgagggaataccacaa---atttttcaacttctc 30171122  T
Q  201 acaacctttgacttcaataaattttaatctggtaagaga 239  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  30171121 acaacctttgacttcaatagattttaatttggtaagaga 30171083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30029723 - 30029500
Alignment:
Q  1 cagaaactaatgagtctcggcaaacgttcaagttcaagagaacgcaacttgggggacagaatcttgttgatctctttattagcttctgatgtttgcacag 100  Q
    ||||||||| |||| |  ||||||| ||||||||||||  |||||||||||||| ||| || |||||| |  ||| ||| | | || ||||||||| |||    
T  30029723 cagaaactactgagaccaggcaaacattcaagttcaagtaaacgcaacttggggaacataaccttgtttacttctatatcatcctcagatgtttgctcag 30029624  T
Q  101 ctattatttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctc 200  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||| || ||||| || |||||  ||||||||||||||||||| ||    
T  30029623 ctatgatttctgtaatcattttgcaatccgaaatttttatttcaagaagttgaggaagatctctaactagagaatatgaaaacagatgcttcaacttatc 30029524  T
Q  201 acaacctttgacttcaataaattt 224  Q
     ||||| ||||||| |||||||||    
T  30029523 gcaaccattgacttgaataaattt 30029500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30223861 - 30223638
Alignment:
Q  1 cagaaactaatgagtctcggcaaacgttcaagttcaagagaacgcaacttgggggacagaatcttgttgatctctttattagcttctgatgtttgcacag 100  Q
    ||||||||| |||| |  ||||||| ||||||||||||  |||||||||||||| ||| || |||||| |  ||| ||| | | || ||||||||| |||    
T  30223861 cagaaactactgagaccaggcaaacattcaagttcaagtaaacgcaacttggggaacataaccttgtttacttctatatcatcctcagatgtttgctcag 30223762  T
Q  101 ctattatttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctc 200  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||| || ||||| || |||||  ||||||||||||||||||| ||    
T  30223761 ctatgatttctgtaatcattttgcaatccgaaatttttatttcaagaagttgaggaagatctctaactagagaatatgaaaacagatgcttcaacttatc 30223662  T
Q  201 acaacctttgacttcaataaattt 224  Q
     ||||| ||||||| |||||||||    
T  30223661 gcaaccattgacttgaataaattt 30223638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30103752 - 30103529
Alignment:
Q  1 cagaaactaatgagtctcggcaaacgttcaagttcaagagaacgcaacttgggggacagaatcttgttgatctctttattagcttctgatgtttgcacag 100  Q
    |||||||||||||| |  ||||||| ||||||||||||  || ||||||||||| ||| || |||||| |  ||| ||| | | || ||||||||| |||    
T  30103752 cagaaactaatgagaccaggcaaacattcaagttcaagtaaatgcaacttggggaacataaccttgtttacttctatatcatcctcagatgtttgctcag 30103653  T
Q  101 ctattatttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctc 200  Q
     ||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||| || ||||| || |||||  ||||||||||||||||||| ||    
T  30103652 ttatgatttctgtaatcattttgcaatccgaaatttttatttcaagaagttgaggaagatctctaactagagaatatgaaaacagatgcttcaacttatc 30103553  T
Q  201 acaacctttgacttcaataaattt 224  Q
     ||||| ||||||| |||||||||    
T  30103552 gcaaccattgacttgaataaattt 30103529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 30790387 - 30790153
Alignment:
Q  1 cagaaactaatgagtctcggcaaacgttcaagttcaagagaacgcaacttgggggacagaatcttgttgatctctttattagcttctgatgtttgcacag 100  Q
    |||||||||||||| || ||||||   ||||||||||||||||  ||||||||| ||| |||||||| ||| ||||||| ||| || ||| ||||| |||    
T  30790387 cagaaactaatgagactaggcaaattctcaagttcaagagaacctaacttggggaacataatcttgtcgatttctttatcagcctcagatttttgctcag 30790288  T
Q  101 ctattatttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctc 200  Q
    |||| ||||||||||||||||  |||| ||||||||||||||  |||||||| |||||||   |||| ||||| ||||| ||||||| ||||||||| |     
T  30790287 ctatgatttctgtaatcatttcacaatcagaaatttttattttgagaagttgcggaaggtttataacaagggagtaccataacagattcttcaacttgtt 30790188  T
Q  201 acaacctttgacttcaataaattttaatctggtaa 235  Q
    ||||||||||||||||| | |||||| | ||||||    
T  30790187 acaacctttgacttcaaaagattttagtttggtaa 30790153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 30252034 - 30251800
Alignment:
Q  1 cagaaactaatgagtctcggcaaacgttcaagttcaagagaacgcaacttgggggacagaatcttgttgatctctttattagcttctgatgtttgcacag 100  Q
    |||||||||||||| || || ||| | |||||||||||||||| |||||||||| ||| ||| ||||  || ||||||| ||| || ||||||||| ||     
T  30252034 cagaaactaatgagactaggtaaatgctcaagttcaagagaacacaacttggggaacataatattgtcaatttctttatcagcctcagatgtttgctcaa 30251935  T
Q  101 ctattatttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctc 200  Q
    | || ||||| |||||||||||||| | ||||||||||||||| ||||| |||||||| |   |||| ||||||||||  |||| || ||||||||| ||    
T  30251934 caatgatttccgtaatcattttgcagtcagaaatttttatttcgagaagatgaggaagatttttaacaagggaataccgtaacaaattcttcaacttttc 30251835  T
Q  201 acaacctttgacttcaataaattttaatctggtaa 235  Q
    ||||||||||||||||| | |||||||| ||||||    
T  30251834 acaacctttgacttcaagagattttaatttggtaa 30251800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 30068332 - 30068107
Alignment:
Q  1 cagaaactaatgagtctcggcaaacgttcaagttcaagagaacgcaacttgggggacagaatcttgttgatctctttattagcttctgatgtttgcacag 100  Q
    |||||||||||||| || |||||    |||||| ||| ||||||||||||  || ||| |||||| | ||| ||||||| ||| ||  |||||||| |||    
T  30068332 cagaaactaatgagactaggcaagttctcaagtacaatagaacgcaacttatggaacataatcttatcgatttctttatcagcatcatatgtttgctcag 30068233  T
Q  101 ctattatttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctc 200  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||||  |||||||||  ||||| |  || ||||| || |||| ||||||||| ||    
T  30068232 ctatgatttctgtaatcattttgcaatcagaaatttttatttcgagaaggcgaggaaggtttctaaccaaagagtaccataaaagattcttcaacttgtc 30068133  T
Q  201 acaacctttgacttcaataaatttta 226  Q
    ||| ||||||||||||| | ||||||    
T  30068132 acagcctttgacttcaaaagatttta 30068107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 30022942 - 30022822
Alignment:
Q  106 atttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctcacaac 205  Q
    |||||||||||||||| ||||| || ||||||||||||| |||||||||||||||| ||||| ||||||||||  ||||||| |||||| || |||||||    
T  30022942 atttctgtaatcatttggcaatcagcaatttttatttcacgaagttgaggaaggtctctaacaagggaataccgcaacagattcttcaatttgtcacaac 30022843  T
Q  206 ctttgacttcaataaatttta 226  Q
    |||||||||||| | ||||||    
T  30022842 ctttgacttcaaaagatttta 30022822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 30037753 - 30037873
Alignment:
Q  106 atttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctcacaac 205  Q
    |||||||||||||||| ||||| || ||||||||||||| |||||||||||||||| ||||| ||||||||||  ||||||| |||||| || |||||||    
T  30037753 atttctgtaatcatttggcaatcagcaatttttatttcacgaagttgaggaaggtctctaacaagggaataccgcaacagattcttcaatttgtcacaac 30037852  T
Q  206 ctttgacttcaataaatttta 226  Q
    |||||||||||| | ||||||    
T  30037853 ctttgacttcaaaagatttta 30037873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 30081348 - 30081228
Alignment:
Q  106 atttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctcacaac 205  Q
    |||||||||||||||| ||||| || ||||||||||||| |||||||||||||||| ||||| ||||||||||  ||||||| |||||| || |||||||    
T  30081348 atttctgtaatcatttggcaatcagcaatttttatttcacgaagttgaggaaggtctctaacaagggaataccgcaacagattcttcaatttgtcacaac 30081249  T
Q  206 ctttgacttcaataaatttta 226  Q
    |||||||||||| | ||||||    
T  30081248 ctttgacttcaaaagatttta 30081228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 30107231 - 30107351
Alignment:
Q  106 atttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctcacaac 205  Q
    |||||||||||||||| ||||| || ||||||||||||| |||||||||||||||| ||||| ||||||||||  ||||||| |||||| || |||||||    
T  30107231 atttctgtaatcatttggcaatcagcaatttttatttcacgaagttgaggaaggtctctaacaagggaataccgcaacagattcttcaatttgtcacaac 30107330  T
Q  206 ctttgacttcaataaatttta 226  Q
    |||||||||||| | ||||||    
T  30107331 ctttgacttcaaaagatttta 30107351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 30119180 - 30119300
Alignment:
Q  106 atttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctcacaac 205  Q
    |||||||||||||||| ||||| || ||||||||||||| |||||||||||||||| ||||| ||||||||||  ||||||| |||||| || |||||||    
T  30119180 atttctgtaatcatttggcaatcagcaatttttatttcacgaagttgaggaaggtctctaacaagggaataccgcaacagattcttcaatttgtcacaac 30119279  T
Q  206 ctttgacttcaataaatttta 226  Q
    |||||||||||| | ||||||    
T  30119280 ctttgacttcaaaagatttta 30119300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 30133879 - 30133999
Alignment:
Q  106 atttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctcacaac 205  Q
    |||||||||||||||| ||||| || ||||||||||||| |||||||||||||||| ||||| ||||||||||  ||||||| |||||| || |||||||    
T  30133879 atttctgtaatcatttggcaatcagcaatttttatttcacgaagttgaggaaggtctctaacaagggaataccgcaacagattcttcaatttgtcacaac 30133978  T
Q  206 ctttgacttcaataaatttta 226  Q
    |||||||||||| | ||||||    
T  30133979 ctttgacttcaaaagatttta 30133999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 30231891 - 30232011
Alignment:
Q  106 atttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctcacaac 205  Q
    |||||||||||||||| ||||| || ||||||||||||| |||||||||||||||| ||||| ||||||||||  ||||||| |||||| || |||||||    
T  30231891 atttctgtaatcatttggcaatcagcaatttttatttcacgaagttgaggaaggtctctaacaagggaataccgcaacagattcttcaatttgtcacaac 30231990  T
Q  206 ctttgacttcaataaatttta 226  Q
    |||||||||||| | ||||||    
T  30231991 ctttgacttcaaaagatttta 30232011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 88 - 217
Target Start/End: Original strand, 30184721 - 30184850
Alignment:
Q  88 gatgtttgcacagctattatttctgtaatcattttgcaattagaaatttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagat 187  Q
    |||||||||||||| || |||||||| |||||||||||||||||||||||||||||| ||||| | ||||| ||  |||| |||||||| || | |||||    
T  30184721 gatgtttgcacagccatgatttctgtcatcattttgcaattagaaatttttatttcacgaagtaggggaagatctgtaacaagggaataacatatcagat 30184820  T
Q  188 gcttcaacttctcacaacctttgacttcaa 217  Q
      |||||||| |||||||||||||||||||    
T  30184821 tattcaacttgtcacaacctttgacttcaa 30184850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 30092270 - 30092181
Alignment:
Q  135 ttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctcacaacctttgacttcaataaattt 224  Q
    |||||||||||||||||||||||| |  ||||| |  |||||  ||||||||||||||||||| || ||||| ||||||| |||||||||    
T  30092270 ttttatttcaagaagttgaggaagattgctaactaaagaatatgaaaacagatgcttcaacttatcgcaaccattgacttgaataaattt 30092181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 30114123 - 30114034
Alignment:
Q  135 ttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctcacaacctttgacttcaataaattt 224  Q
    |||||||||||||||||||||||| |  ||||| |  |||||  ||||||||||||||||||| || ||||| ||||||| |||||||||    
T  30114123 ttttatttcaagaagttgaggaagattgctaactaaagaatatgaaaacagatgcttcaacttatcgcaaccattgacttgaataaattt 30114034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 30128875 - 30128786
Alignment:
Q  135 ttttatttcaagaagttgaggaaggtcactaacgagggaataccaaaacagatgcttcaacttctcacaacctttgacttcaataaattt 224  Q
    |||||||||||||||||||||||| |  ||||| |  |||||  ||||||||||||||||||| || ||||| ||||||| |||||||||    
T  30128875 ttttatttcaagaagttgaggaagattgctaactaaagaatatgaaaacagatgcttcaacttatcgcaaccattgacttgaataaattt 30128786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 7696898 - 7696846
Alignment:
Q  320 taagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    ||||||||||| ||||||||||||||| |||| | |||| |||||||||||||    
T  7696898 taagatgtaaaagatcatatacagtttgaaagaatttttagaaagcttgaatt 7696846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 30102544 - 30102499
Alignment:
Q  179 aaaacagatgcttcaacttctcacaacctttgacttcaataaattt 224  Q
    ||||||||||||||||||| || ||||| ||||||| |||||||||    
T  30102544 aaaacagatgcttcaacttatcgcaaccattgacttgaataaattt 30102499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 23193008 - 23192928
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    ||||| || ||||||||||| ||||   | ||||| | ||||||||||||||||| |||| | ||||| ||||||||||||    
T  23193008 gttttggccgcataataaactgtcctctttagatggagaggatcatatacagtttgaaagaagttttgaaaagcttgaatt 23192928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 23607072 - 23606992
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    ||||| || ||||||||||| ||||   | ||||| | ||||||||||||||||| |||| | ||||| ||||||||||||    
T  23607072 gttttggccgcataataaactgtcctctttagatggagaggatcatatacagtttgaaagaagttttgaaaagcttgaatt 23606992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 23618614 - 23618534
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    ||||| || ||||||||||| ||||   | ||||| | ||||||||||||||||| |||| | ||||| ||||||||||||    
T  23618614 gttttggccgcataataaactgtcctctttagatggagaggatcatatacagtttgaaagaagttttgaaaagcttgaatt 23618534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1156 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold1156
Description:

Target: scaffold1156; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 1491 - 1571
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| | ||||||||||||||||||    
T  1491 gttttagcagcataataaactgtccggctaagatgtaaaggatcatatacagtttgaaagaatttttggaaagcttgaatt 1571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 256 - 368
Target Start/End: Complemental strand, 8133972 - 8133861
Alignment:
Q  256 gatgttgcaattctttctaaaagtttttcttttagtgttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtact 355  Q
    ||||||| |||| |||||||||||||||| ||||  ||||| |||||||||||||||||||||||||| |  | | ||||||||| || ||| |||||||    
T  8133972 gatgttggaattttttctaaaagtttttcctttaaagttttggcagcataataaacagtccgactaaggttcagacgatcatatatag-tttgaagtact 8133874  T
Q  356 tttggaaagcttg 368  Q
    |||| ||||||||    
T  8133873 tttgaaaagcttg 8133861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 372
Target Start/End: Complemental strand, 12847133 - 12847054
Alignment:
Q  293 ttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    |||||||||||||||| || ||||   | ||||| ||||| ||||||||||||| |||| | ||||||||||||||||||    
T  12847133 ttttagcagcataatagactgtcctctttagatggaaagggtcatatacagtttgaaagaagttttggaaagcttgaatt 12847054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 134699 - 134619
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    |||| ||||||||||| ||| ||||   | ||||| |||||||||||| |||||| |||| | ||||||||||||||||||    
T  134699 gtttgagcagcataatgaactgtcctttttagatgcaaaggatcatatgcagtttgaaagaatttttggaaagcttgaatt 134619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 10168846 - 10168926
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    |||||||| ||||||||||| ||||   | ||||| | ||||||||||||| ||| |||| | ||||| ||||||||||||    
T  10168846 gttttagccgcataataaactgtcctttttagatggagaggatcatatacaatttgaaagaagttttgaaaagcttgaatt 10168926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 25019 - 25099
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    |||||||||||||| | ||  |||||  ||||||| ||||||||||||||||||| ||||   ||||||||||||||||||    
T  25019 gttttagcagcatagtgaattgtccgcttaagatgcaaaggatcatatacagtttgaaagattttttggaaagcttgaatt 25099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 30521 - 30601
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    |||||||||||||| | ||  |||||  ||||||| ||||||||||||||||||| ||||   ||||||||||||||||||    
T  30521 gttttagcagcatagtgaattgtccgcttaagatgcaaaggatcatatacagtttgaaagattttttggaaagcttgaatt 30601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 117504 - 117585
Alignment:
Q  291 tgttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    ||||||||||||||||| ||| ||||   | ||||| |||||||||||| |||||| |||| | ||||||||||| ||||||    
T  117504 tgttttagcagcataatgaactgtcctctttagatgcaaaggatcatatgcagtttgaaagaagttttggaaagcctgaatt 117585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 110676 - 110757
Alignment:
Q  291 tgttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    ||||||||||||||||| ||| ||||   | ||||| ||||||||||||  ||||| |||| | ||||||||||| ||||||    
T  110676 tgttttagcagcataatgaactgtcctctttagatgcaaaggatcatatgtagtttgaaagaagttttggaaagcctgaatt 110757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 125358 - 125439
Alignment:
Q  291 tgttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    ||||||||||||||||| ||| ||||   | ||||| ||||||||||||  ||||| |||| | ||||||||||| ||||||    
T  125358 tgttttagcagcataatgaactgtcctctttagatgcaaaggatcatatgaagtttgaaagaagttttggaaagcctgaatt 125439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 372
Target Start/End: Original strand, 21308372 - 21308457
Alignment:
Q  287 ttagtgttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    ||||||||||||| |||||||| || ||||   | ||||| | ||| ||||||||||||| |||| | ||||||||||||||||||    
T  21308372 ttagtgttttagcggcataatagactgtcctctttagatgcagagggtcatatacagtttgaaagaaattttggaaagcttgaatt 21308457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 22687180 - 22687095
Alignment:
Q  287 ttagtgttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    ||||||||||||| |||||||| || ||||   | ||||| | ||| ||||||||||||| |||| | ||||| ||||||||||||    
T  22687180 ttagtgttttagcggcataatagactgtcctctttagatgcagagggtcatatacagtttgaaagaaattttgaaaagcttgaatt 22687095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 8030 - 8110
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    |||||||| ||||||||||| ||||   | ||||| | ||||||||||||||||| |||| | ||||| ||||||||||||    
T  8030 gttttagccgcataataaactgtcctctttagatggagaggatcatatacagtttgaaagaagttttgaaaagcttgaatt 8110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 23801 - 23721
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    |||||||| ||||||||||| ||||   | ||||| | ||||||||||||||||| |||| | ||||| ||||||||||||    
T  23801 gttttagccgcataataaactgtcctctttagatggagaggatcatatacagtttgaaagaagttttgaaaagcttgaatt 23721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 372
Target Start/End: Original strand, 6992 - 7036
Alignment:
Q  328 aaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||    
T  6992 aaaggatcatatacagtttgaaagaagttttggaaagcttgaatt 7036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 31595 - 31675
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    |||||||| ||||||||||| ||||   | ||||| | ||||||||||||||||| |||| | ||||| ||||||||||||    
T  31595 gttttagccgcataataaactgtcctctttagatggagaggatcatatacagtttgaaagaagttttgaaaagcttgaatt 31675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 26463123 - 26463073
Alignment:
Q  322 agatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    ||||| |||||||||||| |||||| |||| | ||||||||||||||||||    
T  26463123 agatgcaaaggatcatatgcagtttgaaagaatttttggaaagcttgaatt 26463073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 2202 - 2282
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    |||||||| ||||||| ||| ||||   | ||||| | ||||||||||||||||| |||| | ||||| ||||||||||||    
T  2202 gttttagccgcataatgaactgtcctctttagatggagaggatcatatacagtttgaaagaaattttgaaaagcttgaatt 2282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 48667 - 48587
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    |||||||| ||||||| ||| ||||   | ||||| | ||||||||||||||||| |||| | ||||| ||||||||||||    
T  48667 gttttagccgcataatgaactgtcctctttagatggataggatcatatacagtttgaaagaaattttgaaaagcttgaatt 48587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 368
Target Start/End: Complemental strand, 46682 - 46606
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttg 368  Q
    |||||||| ||||||||||| ||||   ||||||| | ||| ||||||||||||| |||| | ||||| ||||||||    
T  46682 gttttagccgcataataaactgtcctcttaagatgaagagggtcatatacagtttgaaagaagttttgaaaagcttg 46606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 39020 - 39100
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    |||||||| ||||||||||| ||||   | ||||| | ||||||||||||||||| |||| | ||||| ||||||| ||||    
T  39020 gttttagccgcataataaactgtcctctttagatggagaggatcatatacagtttgaaagaagttttgaaaagcttaaatt 39100  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 14559341 - 14559261
Alignment:
Q  292 gttttagcagcataataaacagtccgactaagatgtaaaggatcatatacagttttaaagtacttttggaaagcttgaatt 372  Q
    |||||||| ||||||||||| ||||   | | ||| | ||||||||||||||||| |||| | ||||| ||||||||||||    
T  14559341 gttttagccgcataataaactgtcctctttaaatggagaggatcatatacagtttgaaagaagttttgaaaagcttgaatt 14559261  T

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