View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_20 (Length: 381)
Name: NF20905_low_20
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 4243548 - 4243224
Alignment:
| Q |
1 |
attggaattattgctgatgctgttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattgacactcgcttattcaatgaagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243548 |
attggaattattgctgatgctgttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattgacactcgcttattcaatgaagaaaa |
4243449 |
T |
|
| Q |
101 |
tgatggctgatcaagcaatggtgagaaaactttctgcatgtgaaactatgggatcagctactactatttgcactgataagacaggtactatttgaaatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243448 |
tgatggctgatcaagcaatggtgagaaaactttctgcatgtgaaactatgggatcagctactactatttgcactgataagacaggtactatttgaaatac |
4243349 |
T |
|
| Q |
201 |
aaaatttagttatattctgttaatagtcatagatagttaatttattgattcttgacttactctttatacatacaatatttcacatactcaccttgatcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243348 |
aaaatttagttatattctgttaatagtcatagatagttaatttattgattcttgacttactctttatacatacaatatttcacatactcaccttgatcat |
4243249 |
T |
|
| Q |
301 |
gtgatttgtaacaggtacactcact |
325 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
4243248 |
gtgatttgtaacaggtacactcact |
4243224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 4237226 - 4237178
Alignment:
| Q |
317 |
acactcactatgaatcaaatgaaggtgacaaagttttggcttggtttag |
365 |
Q |
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| T |
4237226 |
acactcactatgaatcaaatgaaggtgacaaagttttggcttggtttag |
4237178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 6186604 - 6186413
Alignment:
| Q |
1 |
attggaattattgctgatgctgttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattgacactcgcttattcaatgaagaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| || || |||||||| ||||||||||||||||||||||| || |||||||||||||||| |
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| T |
6186604 |
attggaattattgctgatgctgttactattgttgttgttgcaattcctgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaa |
6186505 |
T |
|
| Q |
101 |
tgatggctgatcaagcaatggtgagaaaactttctgcatgtgaaactatgggatcagctactactatttgcactgataagacaggtactatt |
192 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| || || |||||||||||| |
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| T |
6186504 |
tgatggctgatgaagcaatggtgagaaaactctctgcatgtgagactatgggatctgctactactatttgcaccgacaaaacaggtactatt |
6186413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 6186336 - 6186273
Alignment:
| Q |
300 |
tgtgatttgtaacaggtacactcactatgaatcaaatgaaggtgacaaagttttggcttggttt |
363 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||| ||||| |
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| T |
6186336 |
tgtgatttgtaataggtacacttactttgaatcagatgaaggtgacaaagttttggctcggttt |
6186273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 38358195 - 38358032
Alignment:
| Q |
25 |
actattgtcgttgttgctatccccgagggtttaccattagctgtgacattgacactcgcttattcaatgaagaaaatgatggctgatcaagcaatggtga |
124 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||| ||||| ||||||||| | || || ||||| || ||||| | ||||||||| ||||| || ||||||| |
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| T |
38358195 |
actattgtggtcgttgccatccctgagggtttgccattggctgtgacactaactcttgcttactccatgaaaagaatgatggcagatcatgctatggtga |
38358096 |
T |
|
| Q |
125 |
gaaaactttctgcatgtgaaactatgggatcagctactactatttgcactgataagacaggtac |
188 |
Q |
| |
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| |||||||| || |||||||||||||||||||| || ||| ||||||||||| |||||||| |
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| T |
38358095 |
ggaaactttcagcttgtgaaactatgggatcagcaacagttatctgcactgataaaacaggtac |
38358032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 39951752 - 39951669
Alignment:
| Q |
22 |
gttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattgacactcgcttattcaatgaagaaaatgatg |
105 |
Q |
| |
|
||||| || ||||| |||||| | ||||||||||||||||||||||| ||||||| || || | | ||||||||||||||||| |
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| T |
39951752 |
gttacaatcgtcgtcgttgctgttcccgagggtttaccattagctgtaacattgagtcttgcatttgcaatgaagaaaatgatg |
39951669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 1610575 - 1610630
Alignment:
| Q |
130 |
ctttctgcatgtgaaactatgggatcagctactactatttgcactgataagacagg |
185 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| | |||||||||||||||||||| |
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| T |
1610575 |
ctttctgcatgtgagactatgggttcagctagttgcatttgcactgataagacagg |
1610630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 1624960 - 1625015
Alignment:
| Q |
130 |
ctttctgcatgtgaaactatgggatcagctactactatttgcactgataagacagg |
185 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| | |||||||||||||||||||| |
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| T |
1624960 |
ctttctgcatgtgagactatgggttcagctagttgcatttgcactgataagacagg |
1625015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 47487502 - 47487560
Alignment:
| Q |
18 |
tgctgttactattgtcgttgttgctatccccgagggtttaccattagctgtgacattga |
76 |
Q |
| |
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||||||||| ||||| ||||||||| | || || |||||||| |||||||||||||||| |
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| T |
47487502 |
tgctgttacaattgttgttgttgctgttcctgaaggtttacctttagctgtgacattga |
47487560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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