View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20905_low_21 (Length: 377)

Name: NF20905_low_21
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20905_low_21
NF20905_low_21
[»] chr3 (5 HSPs)
chr3 (19-231)||(54260715-54260928)
chr3 (286-360)||(54260983-54261057)
chr3 (185-227)||(6488863-6488905)
chr3 (185-227)||(8108285-8108327)
chr3 (185-227)||(39611702-39611744)
[»] chr1 (3 HSPs)
chr1 (184-227)||(32213585-32213628)
chr1 (185-227)||(36563925-36563967)
chr1 (185-229)||(13208075-13208119)
[»] chr2 (3 HSPs)
chr2 (185-227)||(223892-223934)
chr2 (185-229)||(3002371-3002416)
chr2 (155-227)||(37331860-37331932)
[»] scaffold0223 (1 HSPs)
scaffold0223 (183-231)||(22135-22183)
[»] chr6 (1 HSPs)
chr6 (185-229)||(6100665-6100709)
[»] chr4 (1 HSPs)
chr4 (185-227)||(35808764-35808806)
[»] chr7 (1 HSPs)
chr7 (183-227)||(43803384-43803428)
[»] chr5 (1 HSPs)
chr5 (184-216)||(8713863-8713895)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 54260715 - 54260928
Alignment:
Q  19 tgatattcacagcacaataccgacgtgatccatgatagttgaaacgtgagccacctttccctttaatcattatgtacggtaagtgagatttacgaaagac 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54260715 tgatattcacagcacaataccgacgtgatccacgatagttgaaacgtgagccacctttccctttaatcattatgtacggtaagtgagatttacgaaagac 54260814  T
Q  119 ttaataactttaaagaag-aaaaaagacttaataataaaggagaatgttaacaaatgttacgagtatattgtttaagcatttaaaagtaacaatttttgc 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  || ||||||||||| ||| ||||||||  |||||||||    
T  54260815 ttaataactttaaagaagaaaaaaagacttaataataaaggagaatgttaacaaatgttataagaatattgtttaatcatctaaaagtagtaatttttgc 54260914  T
Q  218 attgaaaattatgt 231  Q
    ||| ||||||||||    
T  54260915 attaaaaattatgt 54260928  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 54260983 - 54261057
Alignment:
Q  286 gtgaacacaattaccttaagacacttgttagcagtacatattaacagataccgataatgacatcattttacagct 360  Q
    |||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| |||||    
T  54260983 gtgaacacaattaccttaaggcacttgttagcattacatattaacaaataccgataatgacatcatttttcagct 54261057  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 6488905 - 6488863
Alignment:
Q  185 attgtttaagcatttaaaagtaacaatttttgcattgaaaatt 227  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  6488905 attgtttaagcatttaaaagtagcaacttttgcattgaaaatt 6488863  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 8108327 - 8108285
Alignment:
Q  185 attgtttaagcatttaaaagtaacaatttttgcattgaaaatt 227  Q
    ||||||||||||| |||||||||||| |||||||||| |||||    
T  8108327 attgtttaagcatctaaaagtaacaacttttgcattggaaatt 8108285  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 39611744 - 39611702
Alignment:
Q  185 attgtttaagcatttaaaagtaacaatttttgcattgaaaatt 227  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||    
T  39611744 attgtttaagcattttaaagtagcaatttttgcactgaaaatt 39611702  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 32213628 - 32213585
Alignment:
Q  184 tattgtttaagcatttaaaagtaacaatttttgcattgaaaatt 227  Q
    |||||||||||||||||||||||  |||||||||||||||||||    
T  32213628 tattgtttaagcatttaaaagtagtaatttttgcattgaaaatt 32213585  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 36563967 - 36563925
Alignment:
Q  185 attgtttaagcatttaaaagtaacaatttttgcattgaaaatt 227  Q
    |||||||||||||||||||||| ||| |||| |||||||||||    
T  36563967 attgtttaagcatttaaaagtagcaacttttacattgaaaatt 36563925  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 13208119 - 13208075
Alignment:
Q  185 attgtttaagcatttaaaagtaacaatttttgcattgaaaattat 229  Q
    ||||||||||||| |||||||||||| ||||| |||| |||||||    
T  13208119 attgtttaagcatctaaaagtaacaacttttgaattggaaattat 13208075  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 223892 - 223934
Alignment:
Q  185 attgtttaagcatttaaaagtaacaatttttgcattgaaaatt 227  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  223892 attgtttaagcatctaaaagtagcaatttttgcattgaaaatt 223934  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 3002371 - 3002416
Alignment:
Q  185 attgtttaagcatttaaaagtaacaa-tttttgcattgaaaattat 229  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||||    
T  3002371 attgtttaagcatataaaagtagcaattttttgcattgaaaattat 3002416  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 37331932 - 37331860
Alignment:
Q  155 aaggagaatgttaacaaatgttacgagtatattgtttaagcatttaaaagtaacaatttttgcattgaaaatt 227  Q
    ||||| |||| ||||||||||||  |  ||||||||||||||| ||||||||  |||||||| ||||| ||||    
T  37331932 aaggaaaatgctaacaaatgttattaagatattgtttaagcatctaaaagtagtaatttttgtattgacaatt 37331860  T

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Target: scaffold0223 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 22135 - 22183
Alignment:
Q  183 atattgtttaagcatttaaaagtaacaatttttgcattgaaaattatgt 231  Q
    ||||||||||| ||||||||||||| ||||||| |||| ||||||||||    
T  22135 atattgtttaaacatttaaaagtaataatttttacattaaaaattatgt 22183  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 6100665 - 6100709
Alignment:
Q  185 attgtttaagcatttaaaagtaacaatttttgcattgaaaattat 229  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||||    
T  6100665 attgtttaagcatataaaagtagcaacttttgcattgaaaattat 6100709  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 35808806 - 35808764
Alignment:
Q  185 attgtttaagcatttaaaagtaacaatttttgcattgaaaatt 227  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||    
T  35808806 attgtttaagcatctaaaagtagcaacttttgcattgaaaatt 35808764  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 43803428 - 43803384
Alignment:
Q  183 atattgtttaagcatttaaaagtaacaatttttgcattgaaaatt 227  Q
    ||||||||||||||| |||||| ||||| |||| |||||||||||    
T  43803428 atattgtttaagcatctaaaagcaacaacttttacattgaaaatt 43803384  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 8713895 - 8713863
Alignment:
Q  184 tattgtttaagcatttaaaagtaacaatttttg 216  Q
    ||||||||||||||||||||||||||| |||||    
T  8713895 tattgtttaagcatttaaaagtaacaacttttg 8713863  T

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