View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20905_low_23 (Length: 374)
Name: NF20905_low_23
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 28474652 - 28474796
Alignment:
| Q |
22 |
tggctatctctggttgcctccttaaaccaaaccactctcttcttcaatgccacaaattcatagctccaaatccaaaccatggttacagaaaccaggttgg |
121 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28474652 |
tggctctctctagttgcctccttaaaccaaaccactctcttcttcaatgccacaaattcatagctccaaatccaaaccatggttacagaaaccaggttgg |
28474751 |
T |
|
| Q |
122 |
tttattcatcacatgcacatgaaatattaatatcattaaccaatg |
166 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28474752 |
tttattcatcccatgcacatgaaatattaatatcattaaccaatg |
28474796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 28474865 - 28474985
Alignment:
| Q |
238 |
ttatgtgttacttgtttttgtgatcagttccgtgtgatggcttcatcaaacagtgatgaggagaggactgttataaggaaagaaaaagatgaatggaaga |
337 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28474865 |
ttatgtgtgacttgtttttgtgatcagttctgtgtgatggcttcatcaaacagtgatgaggagaggactgttataaggaaagaaaaagatgaatggaaga |
28474964 |
T |
|
| Q |
338 |
tcaatttctctgctgaaaaac |
358 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
28474965 |
tcaatttctctgctgaaaaac |
28474985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 28466234 - 28466369
Alignment:
| Q |
22 |
tggctatctctggttgcctccttaaaccaaaccactctcttcttcaatgccacaaattcatagctccaaatccaaaccatggttacagaaaccaggttgg |
121 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28466234 |
tggctctctctagttgcctccttaaaccaaaccattctcttcttcaatgccacaaattcaaagctccaaatccaaaccatggtttcagaaaccaggttgg |
28466333 |
T |
|
| Q |
122 |
tttattcatcacatgcacatgaaatattaatatcat |
157 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
28466334 |
ttttatcatcacatgctcatgaaatattaatatcat |
28466369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 28466444 - 28466564
Alignment:
| Q |
238 |
ttatgtgttacttgtttttgtgatcagttccgtgtgatggcttcatcaaacagtgatgaggagaggactgttataaggaaagaaaaagatgaatggaaga |
337 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28466444 |
ttatgtgtgatttgtttttgtgatcagttctgtgtgatggcttcatcaagcagtgatggggaaaggactattataaggaaagaaaaagatgaatggaaga |
28466543 |
T |
|
| Q |
338 |
tcaatttctctgctgaaaaac |
358 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
28466544 |
tcaatttctctgctgaaaaac |
28466564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University