View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_24 (Length: 349)
Name: NF20905_low_24
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_24 |
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| [»] scaffold1652 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 37238054 - 37237714
Alignment:
| Q |
1 |
actctctcaattcttctactcgctacttcaaaactacttataaatcctaaaatttcattctccttcttcaattttcaacaatggcttcctacaaagttgt |
100 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37238054 |
actctctcaattcttctactcactacttcaaaacttcttataaatcctaaaatttcattctccttcttcaattttcaacaatggcttcctataaagttgt |
37237955 |
T |
|
| Q |
101 |
gttgatgcttgtggctacactattggttagttctaccttcgctcaatctccatcttcatctcccaccatatctcctgttgccacacctgcgatctctccc |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| | ||||||||||| || |||||||| |||||||| || |||||||||||||||||||||||| |
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| T |
37237954 |
gttgatgcttgtggctacactatttgttagttccaccattgctcaatctccttcatcatctccaaccatatcacccgttgccacacctgcgatctctccc |
37237855 |
T |
|
| Q |
201 |
tccactgactcatcggcggcatctcctcccgtacctgtgaagacgtctccatctccttcagcatccgccgccaactctccacctgcttcctctgactctc |
300 |
Q |
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|
||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||| |
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| T |
37237854 |
tccgctgactcaccggtggcatctcctcccgtacctgtgaagacgtctccatctcctttagcatccgccgtcaactctccacctgcttcctctaactctc |
37237755 |
T |
|
| Q |
301 |
ccgctgtttctcctgctgttactccatcatccatctctgctcctcct |
347 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||| |
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| T |
37237754 |
tcg------ctcctgctgttactccatcatccatctctactcctcct |
37237714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 37253394 - 37253036
Alignment:
| Q |
1 |
actctctcaattcttctactcgctacttcaaaactacttataaatcctaaaatttcattctccttcttcaattttcaacaatggcttcctacaaagttgt |
100 |
Q |
| |
|
||||||||||||||||||| | || |||||||||| |||||||| ||||| ||| |||||||||| |||| ||| ||||||||||| |||| |||||| |
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| T |
37253394 |
actctctcaattcttctacacactgcttcaaaacttcttataaaccctaattttttattctccttcatcaaatttttacaatggcttcatacacagttgt |
37253295 |
T |
|
| Q |
101 |
gttgatgcttgtggctacactattggttagttctaccttcgctcaatctccatcttcatctcccaccatatctcctgttgccacacctgcgatctctccc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37253294 |
tttgatgcttgtggctacactattggttagttctaccttcgctcaatctccatcttcatctcccaccatatcccctgttgccacacctgcgatctctccc |
37253195 |
T |
|
| Q |
201 |
tccactgactcatcggcggcatctcctcccgtacctgtgaagacgtctccatctccttcagcatccgccgccaactctcca------------cctgctt |
288 |
Q |
| |
|
||| |||||||| ||||||||||| ||||| |||||||||||| |||||||||||||| | || ||| |||||||||| ||||||| |
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| T |
37253194 |
tccgctgactcaccggcggcatctgctcccatacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcctgctt |
37253095 |
T |
|
| Q |
289 |
cctctgactctcccgctgtttctcctgctgttactccatcatccatctctgctcctcct |
347 |
Q |
| |
|
| || |||||||||||||| ||||||||| |||||||||||||||| || |||||||| |
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|
| T |
37253094 |
catccgactctcccgctgtctctcctgctcttactccatcatccatttccactcctcct |
37253036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 37257503 - 37257330
Alignment:
| Q |
11 |
ttcttctactcgctacttcaaaactacttataaatcctaaaatttcattctccttcttcaattttcaacaatggcttcctacaaagttgtgttgatgctt |
110 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||| |||||| ||||||||| |
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| T |
37257503 |
ttcttctacttactacttcaaaacttcttataaaccctaaaatttcattctccttcttcaactttctacaatggcttcttacacagttgtattgatgctt |
37257404 |
T |
|
| Q |
111 |
gtggctacactattggttagttctaccttcgctcaatctccatcttcatctcccaccatatctcctgttgccac |
184 |
Q |
| |
|
||||||||||| ||||||||||| || | ||||||||||| || |||||||| |||||||| || |||||||| |
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| T |
37257403 |
gtggctacactgttggttagttccactattgctcaatctccttcatcatctccaaccatatcacccgttgccac |
37257330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 40 - 283
Target Start/End: Complemental strand, 37233094 - 37232863
Alignment:
| Q |
40 |
ataaatcctaaaatttcattctccttcttcaattttcaacaatggcttcctacaaagttgtgttgatgcttgtggctacactattggttagttctacctt |
139 |
Q |
| |
|
||||| ||||| ||||||| || |||||||| ||| || |||||||||||||||||||||||||||||||||||| || | ||||| ||||| ||||| |
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|
| T |
37233094 |
ataaaccctaatttttcattttcattcttcaaatttttactatggcttcctacaaagttgtgttgatgcttgtggctgcattgttggtgagttccacctt |
37232995 |
T |
|
| Q |
140 |
cgctcaatctccatcttcatctcccaccatatctcctgttgccacacctgcgatctctccctccactgactcatcggcggcatctcctcccgtacctgtg |
239 |
Q |
| |
|
||||||||| ||||| |||||||| ||| |||| |||||||||||||||||| || ||||| |||| ||||||||||||| ||||||| |
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| T |
37232994 |
cgctcaatcaccatcgtcatctccgtccaaatct------------cctgcgatctctccctccgctcactcaccggctgcatctcctcccgcacctgtg |
37232907 |
T |
|
| Q |
240 |
aagacgtctccatctccttcagcatccgccgccaactctccacc |
283 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||||||||||| |
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|
| T |
37232906 |
aagaattctccatctccttcgccatccgccatcaactctccacc |
37232863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 21187674 - 21187587
Alignment:
| Q |
65 |
tcttcaattttcaacaatggcttcctacaaagttgtgttgatgcttgtggctacactattggttagttctaccttcgctcaatctcca |
152 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21187674 |
tcttcaattttctacaatggcttcctacaaagttgcattgatgcttgtggctacactattggttagttctaccttcgctcaatctcca |
21187587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 27245614 - 27245502
Alignment:
| Q |
40 |
ataaatcctaaaatttcattctccttcttcaattttcaacaatggcttcctacaaagttgtgttgatgcttgtggctacactattggttagttctacctt |
139 |
Q |
| |
|
||||| ||||| ||| ||||| | |||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| ||| |
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|
| T |
27245614 |
ataaaccctaatttttaattcttcgtcttcaattttctacaatggtttcctacaaagttgcattgatccttgtggctacactattggttagttctatctt |
27245515 |
T |
|
| Q |
140 |
cgctcaatctcca |
152 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27245514 |
cgctcaatctcca |
27245502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 37257235 - 37257170
Alignment:
| Q |
282 |
cctgcttcctctgactctcccgctgtttctcctgctgttactccatcatccatctctgctcctcct |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
37257235 |
cctgcttcctctgactctcccgctgtttctcctgctgttactccatcatccatctctactactcct |
37257170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 37242427 - 37242325
Alignment:
| Q |
61 |
tccttcttcaattttcaacaatggcttcctacaaagttgtgttgatgcttgtggctacactattggttagttctaccttcgctcaatctccatcttcatc |
160 |
Q |
| |
|
|||||| |||| |||| || ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| || | ||||| ||| ||||| |
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|
| T |
37242427 |
tccttcatcaaatttctactatggcttcctacatggttgtgttgatgcttgtggcctcactattggttagttctacctttgcacgatctctatcatcatc |
37242328 |
T |
|
| Q |
161 |
tcc |
163 |
Q |
| |
|
||| |
|
|
| T |
37242327 |
tcc |
37242325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 396 - 453
Alignment:
| Q |
186 |
cctgcgatctctccctccactgactcatcggcggcatctcctcccgtacctgtgaaga |
243 |
Q |
| |
|
|||||||| ||||||||| || ||||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
396 |
cctgcgatttctccctccgctaactcaacggtggcatctgctcccgtacctgtgaaga |
453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 14351745 - 14351689
Alignment:
| Q |
275 |
ctctccacctgcttcctctgactctcccgctgtttctcctgctgttactccatcatc |
331 |
Q |
| |
|
|||||| | |||||||| || ||||||||||| |||||||||||||||||||||| |
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|
| T |
14351745 |
ctctcctcatgcttcctttggttctcccgctgtcgctcctgctgttactccatcatc |
14351689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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