View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_29 (Length: 333)
Name: NF20905_low_29
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 35838416 - 35838740
Alignment:
| Q |
1 |
catcttgctcattagacatgttcagttttgttgacctagtataccttgctaaatataagaaatccacctctcacgttttaatatgctacctataattatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35838416 |
catcttgctcattagacatgttcagttttgttgacctagtataccttgctaaatataagaaatccacctctcacgttttaatatgctacctataattatg |
35838515 |
T |
|
| Q |
101 |
ttatgagtgacccattaaataaacttagttttcattcctttattttctgattttgttcaagagtaaccgtcacatgtctctctatactagttatgccatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| |
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| T |
35838516 |
ttatgagtgacccattaaataaacttagttttcattcctttattttctgattttgttcaagagtaaccgtcacatgtttatctat-ctagttatgccatg |
35838614 |
T |
|
| Q |
201 |
aataacacaatcagagaagagacttgaaataactctcacggctacaaacatcctgcagatagacgtgtaacaaatacaccctagcagcctcctttgatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
35838615 |
aataacacaatcagagaagagacttgaaataactctcacggctacaaacatcctgcagatagacatgtaacaaatacaccctagcagtctcctttgatta |
35838714 |
T |
|
| Q |
301 |
tcacttcttcatcggactctctgctc |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
35838715 |
tcacttcttcatcggactctctgctc |
35838740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 44435407 - 44435468
Alignment:
| Q |
8 |
ctcattagacatgttcagttttgttgacctagtataccttgctaaatataagaaatccacct |
69 |
Q |
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| T |
44435407 |
ctcattagaaatgttcacttttgttgacctagtattgcttgctgaatataaggaattcacct |
44435468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 36302427 - 36302310
Alignment:
| Q |
115 |
ttaaataaacttagttttcattcctttatttt--ctgattttgttcaagagtaaccgtcacatgtctctctatactagttatgccatgaataacacaatc |
212 |
Q |
| |
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||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||| ||||| ||| ||| |||||||| ||||||||| |||||||| |
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| T |
36302427 |
ttaaataaacttagtttccatccctttatttttcctggttttgttcaagagtaaccgccacatatctatctgtactagtt-tgccatgaacaacacaatt |
36302329 |
T |
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| Q |
213 |
agagaagagacttgaaata |
231 |
Q |
| |
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||| ||||||||||||||| |
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| T |
36302328 |
agacaagagacttgaaata |
36302310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 36302951 - 36302842
Alignment:
| Q |
12 |
ttagacatgttcagttttgttgacctagtataccttgctaaatataagaaatccacctctcacgttttaatatgctacctataattatgttatgagtgac |
111 |
Q |
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||||||||||||| |||||||||||||||||| || |||||||| || || |||||||||||||||| || || |||||| ||||| |||||||| |
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| T |
36302951 |
ttagacatgttcacctttgttgacctagtatactttcctaaatatgaggaactcacctctcacgtttta--attctgcctatagttatgctatgagtggt |
36302854 |
T |
|
| Q |
112 |
ccattaaataaa |
123 |
Q |
| |
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| |||||||||| |
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| T |
36302853 |
cgattaaataaa |
36302842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 8420715 - 8420787
Alignment:
| Q |
91 |
tataattatgttatgagtgacccatt--aaataaacttagttttcattcctttatt-ttctgattttgttcaa |
160 |
Q |
| |
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|||| ||||| |||||||||| || | |||||||| ||||||||||| ||||||| |||||||||||||||| |
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| T |
8420715 |
tatagttatgctatgagtgactcaattaaaataaacctagttttcatttctttattattctgattttgttcaa |
8420787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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