View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20905_low_34 (Length: 294)
Name: NF20905_low_34
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_34 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 38931045 - 38931321
Alignment:
| Q |
20 |
tcactctccgcctgttctgccaccgcgaaattctgcggcaccaccaacaatcttcccctttttacctctccattgaacaccgattttccctcactattca |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38931045 |
tcactctccgcctgttctgccactgcgaaattctgcggcaccaccaacaatcttcccctttttacctctccattgaacactgattttccctcactattca |
38931144 |
T |
|
| Q |
120 |
ccacttgaaccctccctcttcctcttgttacatacattatgctgttcgcattcatgttccaatgtggcacaaatataccatcctgcacataagcgaaata |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38931145 |
ccacttgaaccctccctcttcctcttgttacgtacattatgctgttcgcattcatgttccaatgtggcacaaatataccatcctgcacataagcgaaata |
38931244 |
T |
|
| Q |
220 |
tcagttaagttaaatttaaatgatatagttcaatg--taacacgtgacttctgcaatacagaattgcagaatgatgc |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
38931245 |
tcagttaagttaaatttaaatgatatagttcagtgtctgacacgtgacttctgcaattcataattgcagaatgatgc |
38931321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University