View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20905_low_38 (Length: 272)

Name: NF20905_low_38
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20905_low_38
NF20905_low_38
[»] chr5 (20 HSPs)
chr5 (14-272)||(10977067-10977325)
chr5 (14-125)||(14356199-14356310)
chr5 (213-272)||(10978291-10978350)
chr5 (110-194)||(15856653-15856738)
chr5 (108-202)||(20539252-20539347)
chr5 (108-199)||(33173865-33173958)
chr5 (102-194)||(38471409-38471503)
chr5 (54-194)||(223346-223488)
chr5 (97-199)||(1010261-1010363)
chr5 (97-199)||(8521372-8521474)
chr5 (129-199)||(30857917-30857987)
chr5 (102-166)||(14210291-14210355)
chr5 (102-199)||(32757943-32758042)
chr5 (18-199)||(22308614-22308797)
chr5 (133-194)||(2167450-2167511)
chr5 (133-194)||(5383062-5383123)
chr5 (122-199)||(9169704-9169781)
chr5 (155-192)||(9378625-9378662)
chr5 (133-194)||(40058138-40058199)
chr5 (127-191)||(22165106-22165170)
[»] chr2 (23 HSPs)
chr2 (14-272)||(9472669-9472926)
chr2 (14-194)||(15850475-15850655)
chr2 (130-225)||(1149117-1149212)
chr2 (14-92)||(28109685-28109764)
chr2 (102-194)||(35799632-35799725)
chr2 (14-192)||(34513364-34513544)
chr2 (132-203)||(42366982-42367053)
chr2 (102-199)||(2277369-2277467)
chr2 (102-199)||(28562710-28562808)
chr2 (102-194)||(8537132-8537225)
chr2 (206-267)||(9474057-9474118)
chr2 (110-194)||(26205133-26205218)
chr2 (102-199)||(34147254-34147353)
chr2 (132-199)||(18971227-18971294)
chr2 (117-199)||(7753442-7753524)
chr2 (133-202)||(14509320-14509390)
chr2 (110-191)||(29424523-29424605)
chr2 (104-172)||(1083132-1083201)
chr2 (133-194)||(10367359-10367420)
chr2 (130-199)||(21664920-21664989)
chr2 (133-194)||(25570805-25570866)
chr2 (133-193)||(12959640-12959700)
chr2 (129-201)||(17460613-17460685)
[»] chr3 (29 HSPs)
chr3 (33-265)||(5123178-5123410)
chr3 (58-193)||(53624219-53624354)
chr3 (113-194)||(43346361-43346443)
chr3 (110-194)||(21128045-21128130)
chr3 (82-194)||(45421229-45421342)
chr3 (80-199)||(20314642-20314762)
chr3 (110-197)||(48254800-48254888)
chr3 (79-199)||(20336534-20336655)
chr3 (102-199)||(21515512-21515609)
chr3 (110-185)||(21074188-21074264)
chr3 (104-194)||(3209869-3209960)
chr3 (105-194)||(48867336-48867426)
chr3 (104-192)||(35372062-35372151)
chr3 (108-199)||(10731002-10731094)
chr3 (104-172)||(52719793-52719861)
chr3 (128-199)||(46495612-46495683)
chr3 (32-94)||(25583333-25583395)
chr3 (110-155)||(47765597-47765643)
chr3 (128-201)||(7270439-7270512)
chr3 (109-193)||(12106697-12106782)
chr3 (104-172)||(41263782-41263851)
chr3 (14-94)||(50809572-50809652)
chr3 (14-94)||(50866210-50866290)
chr3 (133-198)||(53420436-53420501)
chr3 (122-199)||(55423511-55423588)
chr3 (112-199)||(18442366-18442454)
chr3 (112-199)||(19487440-19487528)
chr3 (119-195)||(35633346-35633422)
chr3 (104-199)||(40244303-40244399)
[»] chr4 (30 HSPs)
chr4 (14-265)||(668438-668689)
chr4 (102-199)||(13533162-13533259)
chr4 (104-194)||(34438526-34438616)
chr4 (14-194)||(43419191-43419371)
chr4 (110-194)||(56296313-56296398)
chr4 (103-199)||(27847795-27847891)
chr4 (102-199)||(40723345-40723443)
chr4 (14-199)||(56085465-56085650)
chr4 (110-184)||(26393038-26393113)
chr4 (110-184)||(56000417-56000492)
chr4 (102-199)||(6348272-6348370)
chr4 (54-194)||(38555130-38555272)
chr4 (161-225)||(36614185-36614249)
chr4 (110-184)||(3533519-3533594)
chr4 (108-198)||(4714139-4714230)
chr4 (102-199)||(2162727-2162825)
chr4 (106-188)||(33231519-33231601)
chr4 (53-158)||(53401336-53401442)
chr4 (102-182)||(1794548-1794629)
chr4 (110-198)||(29663758-29663847)
chr4 (103-156)||(52633598-52633651)
chr4 (110-156)||(306735-306780)
chr4 (113-194)||(17494247-17494329)
chr4 (102-199)||(37884178-37884276)
chr4 (14-76)||(54485430-54485492)
chr4 (104-172)||(2311098-2311167)
chr4 (133-194)||(11114915-11114976)
chr4 (122-199)||(28657039-28657116)
chr4 (106-158)||(50547066-50547118)
chr4 (14-94)||(54484464-54484544)
[»] chr6 (16 HSPs)
chr6 (130-225)||(136719-136814)
chr6 (102-199)||(7312184-7312281)
chr6 (130-219)||(30231576-30231665)
chr6 (108-199)||(24757000-24757092)
chr6 (104-201)||(29380306-29380404)
chr6 (102-199)||(32505786-32505884)
chr6 (104-201)||(23397257-23397355)
chr6 (133-194)||(293575-293636)
chr6 (133-194)||(14328709-14328770)
chr6 (133-194)||(14421719-14421780)
chr6 (117-202)||(9927716-9927802)
chr6 (108-194)||(27082081-27082168)
chr6 (14-94)||(232325-232405)
chr6 (130-199)||(15728848-15728917)
chr6 (14-73)||(18558656-18558716)
chr6 (102-194)||(22298724-22298816)
[»] chr7 (13 HSPs)
chr7 (102-199)||(9662138-9662235)
chr7 (130-225)||(26135733-26135828)
chr7 (14-194)||(26406245-26406425)
chr7 (14-194)||(35484126-35484306)
chr7 (133-219)||(7354602-7354688)
chr7 (103-194)||(28325192-28325284)
chr7 (110-199)||(16755989-16756079)
chr7 (109-225)||(3332064-3332181)
chr7 (104-199)||(11501297-11501393)
chr7 (110-184)||(45719745-45719820)
chr7 (109-194)||(25154846-25154932)
chr7 (133-194)||(46458648-46458709)
chr7 (129-225)||(44554696-44554791)
[»] chr1 (26 HSPs)
chr1 (133-246)||(16757456-16757569)
chr1 (102-194)||(19466109-19466201)
chr1 (102-193)||(51300160-51300252)
chr1 (103-194)||(36509931-36510022)
chr1 (102-199)||(48096932-48097030)
chr1 (97-199)||(15746662-15746764)
chr1 (104-184)||(16963966-16964047)
chr1 (102-186)||(30535570-30535654)
chr1 (129-193)||(38965195-38965259)
chr1 (108-199)||(41873877-41873969)
chr1 (117-198)||(34258627-34258709)
chr1 (108-172)||(7161229-7161294)
chr1 (13-138)||(15743416-15743540)
chr1 (14-199)||(46467264-46467449)
chr1 (134-195)||(47762015-47762076)
chr1 (102-201)||(51042240-51042343)
chr1 (133-194)||(51726779-51726840)
chr1 (102-202)||(835390-835489)
chr1 (14-200)||(9226027-9226214)
chr1 (102-185)||(21507197-21507280)
chr1 (110-194)||(9633895-9633980)
chr1 (133-194)||(21277114-21277175)
chr1 (129-225)||(48492820-48492916)
chr1 (133-246)||(51042753-51042866)
chr1 (133-193)||(8092719-8092779)
chr1 (102-194)||(13642461-13642553)
[»] chr8 (25 HSPs)
chr8 (104-199)||(32693947-32694043)
chr8 (110-184)||(24069357-24069432)
chr8 (110-194)||(13513540-13513625)
chr8 (110-194)||(13603073-13603158)
chr8 (110-194)||(34617106-34617191)
chr8 (110-184)||(7770809-7770884)
chr8 (110-184)||(7796719-7796794)
chr8 (110-184)||(7816000-7816075)
chr8 (110-184)||(39515329-39515404)
chr8 (40-172)||(44076200-44076332)
chr8 (104-199)||(42100009-42100105)
chr8 (102-193)||(38696908-38696999)
chr8 (97-199)||(42877736-42877838)
chr8 (133-194)||(13366985-13367046)
chr8 (129-194)||(39220799-39220864)
chr8 (102-194)||(44606259-44606352)
chr8 (102-157)||(6397942-6397998)
chr8 (128-199)||(42872117-42872188)
chr8 (113-172)||(45395112-45395171)
chr8 (104-201)||(32797256-32797354)
chr8 (32-126)||(36938869-36938963)
chr8 (110-198)||(14840807-14840896)
chr8 (110-170)||(38696455-38696516)
chr8 (104-184)||(45279812-45279893)
chr8 (133-189)||(36070303-36070359)
[»] scaffold2071 (1 HSPs)
scaffold2071 (102-193)||(581-673)
[»] scaffold0178 (1 HSPs)
scaffold0178 (102-194)||(1331-1422)
[»] scaffold0148 (1 HSPs)
scaffold0148 (102-198)||(14820-14916)
[»] scaffold0034 (1 HSPs)
scaffold0034 (104-198)||(109648-109743)
[»] scaffold0018 (2 HSPs)
scaffold0018 (108-225)||(151966-152084)
scaffold0018 (104-200)||(151452-151549)
[»] scaffold0031 (1 HSPs)
scaffold0031 (109-182)||(125137-125212)
[»] scaffold0128 (1 HSPs)
scaffold0128 (102-172)||(22125-22196)
[»] scaffold0122 (1 HSPs)
scaffold0122 (133-194)||(16065-16126)
[»] scaffold0201 (1 HSPs)
scaffold0201 (108-199)||(21245-21337)
[»] scaffold0077 (1 HSPs)
scaffold0077 (104-199)||(52709-52805)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 10977325 - 10977067
Alignment:
Q  14 agaagatgaagaaaggagaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatca 113  Q
    |||||||||| ||||| |||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||||| ||||| |||||||||||||    
T  10977325 agaagatgaataaaggggaaaataattagttgttgatggttcatcgtatgatacaatagacatatatgatccaacggttcctgttttcaaaaatagatca 10977226  T
Q  114 aatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaacaggaccaat 213  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||| |||||||    
T  10977225 aatggataaaattaaaaaattaatatggtctatggtagaccacatacaatgttggtccatcttagacatttgaagttaaaattaacggaacatgaccaat 10977126  T
Q  214 ttgactgacggatgtataattgaaggaccgaaacgtgggttttattagttatagtacca 272  Q
    |||||||||||| ||| |||||| |||||||||||||||||||||||||||||| ||||    
T  10977125 ttgactgacggacgtaaaattgagggaccgaaacgtgggttttattagttataggacca 10977067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 14356199 - 14356310
Alignment:
Q  14 agaagatgaagaaaggagaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatca 113  Q
    ||||||| |||||||||||||||||| ||||||||||| |||||| ||  ||||||||||| | |||||| ||||| | |||||||  ||||||||||||    
T  14356199 agaagataaagaaaggagaaaataataagttgttgatgattcaccatataatacaatagacttttgtgatacaacgatccttgttttgaaaaatagatca 14356298  T
Q  114 aatggttaaaat 125  Q
    ||||||||||||    
T  14356299 aatggttaaaat 14356310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 10978291 - 10978350
Alignment:
Q  213 tttgactgacggatgtataattgaaggaccgaaacgtgggttttattagttatagtacca 272  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||||    
T  10978291 tttgactgacggacgtataattgagggaccgaaacgtgggttttattatttataggacca 10978350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 15856738 - 15856653
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    |||||||| |||||||| ||||| ||| ||||||||||||| |||||| ||||||||||||||| |||| ||||||  ||||||||    
T  15856738 atcaaatgattaaaattaaaaaacttagtaaggtctatggtggaccacctataatgttggtccaccttagacatttagggttaaaa 15856653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 20539252 - 20539347
Alignment:
Q  108 agatcaaatggttaaaatttaaaa-attaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacgga 202  Q
    |||||||| |||| ||||| |||| |||||||||||||||| |||||||| || ||| |||||||| |||||| |||||  |||||| ||||||||    
T  20539252 agatcaaacggtttaaattaaaaaaattaataaggtctatgatagaccacctacaatattggtccaccttatatatttggtgttaaacttaacgga 20539347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 33173865 - 33173958
Alignment:
Q  108 agatcaaatggttaaaatttaaaaa--ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    |||||||| ||||||||||||||||  ||||| | |||||||||||||||||  ||| ||||||||| | || ||||||| ||||||| |||||    
T  33173865 agatcaaacggttaaaatttaaaaaaattaatgaagtctatggtagaccactcttaaggttggtccaccatagacatttggggttaaacttaac 33173958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 38471503 - 38471409
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaa--attaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||| |||||||| |||||||||  ||||  | |||||| |||||||||||||||| ||||| |||||| || |||| |||||| |||||||||    
T  38471503 aaaaaaagatcaaacggttaaaataaaaaataaataataaagtctatggtagaccacctataaagttggttcaccttaaacatttaaggttaaaa 38471409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 223488 - 223346
Alignment:
Q  54 tcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgca-aaaatagatcaaatggttaaaatttaaaaatt-aataaggtctatggtag 151  Q
    |||||||| |||| |||||||||  || |||||| ||||||  |||  | |||| |||||||| |||| ||||| ||||||| ||||| |||||||||||    
T  223488 tcaccgtaagataaaatagacatgagtaatccaaaggttctactttaaataaaaaagatcaaacggtttaaattaaaaaatttaataaagtctatggtag 223389  T
Q  152 accacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||| || || |||||| || |||| |||||| || ||||||    
T  223388 accacctacaaagttggttcaccttagacatttaagattaaaa 223346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 1010261 - 1010363
Alignment:
Q  97 tttgcaaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaatt 196  Q
    |||| |||||||||||||| |||| ||||| || |||||||| | |||||||  |||||||  ||| ||||||||| | || ||||||| ||||||| ||    
T  1010261 tttggaaaaatagatcaaagggttgaaattaaataattaataggatctatggcggaccactcttaaggttggtccaccatacacatttggggttaaagtt 1010360  T
Q  197 aac 199  Q
    |||    
T  1010361 aac 1010363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 8521474 - 8521372
Alignment:
Q  97 tttgcaaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaatt 196  Q
    |||| |||||||||||||| |||| ||||| || |||||||| | |||||||| ||||| |  ||| ||||||||| | || ||||||| ||||||| ||    
T  8521474 tttgaaaaaatagatcaaagggttgaaattaaataattaataggatctatggtggaccattcttaaggttggtccaccatacacatttggggttaaagtt 8521375  T
Q  197 aac 199  Q
    |||    
T  8521374 aac 8521372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 30857987 - 30857917
Alignment:
Q  129 aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    |||||||||||||||| || |||||||||| ||| ||||||||||| || |||||| | |||||| |||||    
T  30857987 aaaattaataaggtctctgatagaccacttttaaggttggtccatcatagacatttaaagttaaagttaac 30857917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 14210355 - 14210291
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgtt 166  Q
    ||||| |||||||| |||||||||  |||| ||||| ||||||||| | ||||||||||||||||    
T  14210355 aaaaaaagatcaaaaggttaaaataaaaaatttaatgaggtctatgatggaccacttataatgtt 14210291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 32758042 - 32757943
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaa--ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| |||||||| |||||||||| |||||  ||||||||||||||||| ||| |  ||  ||||||||||| | || ||||||| ||||||| |||||    
T  32758042 aaaaaaagatcaaagggttaaaattgaaaaaaattaataaggtctatggtggactatctaccatgttggtccaccatagacatttggggttaaagttaac 32757943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 22308614 - 22308797
Alignment:
Q  18 gatgaagaaagga-gaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatcaaat 116  Q
    ||||||||||| | ||||| |||||| ||||| |||| ||||||| |  |||||||||||   | |||||| |||  |  |||  ||||| |||||||||    
T  22308614 gatgaagaaagaaagaaaaaaattaggtgttgttggtacaccgtaagtaacaatagacatgcataatccaatggtcatctttttaaaaaacagatcaaat 22308713  T
Q  117 ggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    |||| | ||| ||||| ||||||| ||||||||| |||||||  ||| || |||||| | || ||||||| ||||||| |||||    
T  22308714 ggtttacattaaaaaatttaataatgtctatggtggaccactcttaaggtaggtccaccatagacatttggggttaaacttaac 22308797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 2167450 - 2167511
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| |||||  ||||| |||||| || |||| |||||| |||||||||    
T  2167450 ttaataaggtctatggtggaccatctataaagttggttcaccttagacatttaaggttaaaa 2167511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 5383123 - 5383062
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| |||||| ||||| |||| | || |||| |||||| |||||||||    
T  5383123 ttaataaggtctatggtggaccacctataaagttgattcaccttagacatttaaggttaaaa 5383062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 9169781 - 9169704
Alignment:
Q  122 aaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||||||||||||||| |||||||| | |||||  |||||| ||||||||   || ||||||| ||||||| |||||    
T  9169781 aaatttaaaaattaatacggtctatgatggaccatctataatattggtccactatagacatttggggttaaagttaac 9169704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 9378625 - 9378662
Alignment:
Q  155 acttataatgttggtccatcttatacatttgaggttaa 192  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  9378625 acttataatgttggtccaccttagacatttgaggttaa 9378662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 40058199 - 40058138
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| ||| |||||||| |||||| || |||| |||||| || ||||||    
T  40058199 ttaataaggtctatggtggactacttataaagttggttcaccttagacatttaagattaaaa 40058138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 22165170 - 22165106
Alignment:
Q  127 taaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggtta 191  Q
    ||||||||||| | |||| |||| |||||| ||||||||||||||| |  | |||||||||||||    
T  22165170 taaaaattaatgacgtctttggtggaccacctataatgttggtccaccaaagacatttgaggtta 22165106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 9472926 - 9472669
Alignment:
Q  14 agaagatgaagaaaggagaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatca 113  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| | ||||| || ||||| ||||| |||||||||||||    
T  9472926 agaagatgaagaaaggggaaaataattagttgttgatggttcatcgta-gatacaatagacatatatgatcaaatggttcctgttttcaaaaatagatca 9472828  T
Q  114 aatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaacaggaccaat 213  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| | |||||  ||||||||||||||||||||||||||    
T  9472827 aatggataaaattaaaaaattaatatggtctatggtagaccacatacaatgttggtccatcttagatatttggagttaaaattaacggaacaggaccaat 9472728  T
Q  214 ttgactgacggatgtataattgaaggaccgaaacgtgggttttattagttatagtacca 272  Q
    |||||||||| | |||||||||| ||||||||||||||||||||| |||||||| ||||    
T  9472727 ttgactgacgaacgtataattgagggaccgaaacgtgggttttataagttataggacca 9472669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 15850475 - 15850655
Alignment:
Q  14 agaagatgaagaaaggagaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaa-aatagatc 112  Q
    |||||||||||||| | ||||| |||| |||||||  |||||||  ||| ||||||||||||| | ||||| ||| |||||  |||  ||| || |||||    
T  15850475 agaagatgaagaaatgggaaaa-aattggttgttggcggttcactatacaatacaatagacatgtatgatctaactgttctcatttataaacaaaagatc 15850573  T
Q  113 aaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||| |||||||||| ||||  || |||| |||||||| |||||| |||||||||||| || |||| ||||||  ||||||||    
T  15850574 aaagggttaaaattaaaaatctattaagatctatggtggaccacctataatgttggttcaccttagacatttagggttaaaa 15850655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 225
Target Start/End: Original strand, 1149117 - 1149212
Alignment:
Q  130 aaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaacaggaccaatttgactgacgga 225  Q
    |||||||||||||||||||| ||||| |||  |||| ||||||| ||| | |||||| |||||||||||||||| | ||| ||||||||| |||||    
T  1149117 aaattaataaggtctatggtggaccatttaccatgtcggtccatattagatatttgatgttaaaattaacggaataagactaatttgactaacgga 1149212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 28109685 - 28109764
Alignment:
Q  14 agaagatgaagaaa-ggagaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggtt 92  Q
    |||||||||||||| |||||||| |||||| ||||||| |||||||||| ||||||| |||||| | |||||||||||||    
T  28109685 agaagatgaagaaatggagaaaaaaattaggtgttgattgttcaccgtatgatacaacagacatatatgatccaacggtt 28109764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 35799725 - 35799632
Alignment:
Q  102 aaaaatagatcaaatggttaaaatt-taaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||| |||||||| |||||||||| ||| | ||||||| |||||||||||||||||||||| |||| | || |||| |||||| |||||||||    
T  35799725 aaaaaaagatcaaacggttaaaattataacatttaataaagtctatggtagaccacttataaagttgattcaccttagacatttaaggttaaaa 35799632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 34513364 - 34513544
Alignment:
Q  14 agaagatgaagaaagga-gaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatc 112  Q
    ||||||||||||||| | ||||| |||||||||||| |||| ||||||| | |||||||||||    | |||||| | |  |  |||  ||||| |||||    
T  34513364 agaagatgaagaaagaaagaaaaaaattagttgttgttggtacaccgtaagttacaatagacacgcataatccaatgatcatctttttaaaaaacagatc 34513463  T
Q  113 aaatggttaaaatttaaaa-attaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaa 192  Q
    ||| |||| ||||| |||| |||||||||||||||||| || ||||  ||| ||||||| | | |||||||||| ||||||    
T  34513464 aaacggtttaaattaaaaaaattaataaggtctatggtggatcactcttaaggttggtcaaccatatacatttggggttaa 34513544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 42367053 - 42366982
Alignment:
Q  132 attaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaa 203  Q
    ||||||||||||||| ||||||||| |  |||| |||||||||||| ||||| | ||||| |||||||||||    
T  42367053 attaataaggtctatcgtagaccaccttcaatgatggtccatcttacacattaggggttagaattaacggaa 42366982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 2277369 - 2277467
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaa-attaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| |||||||| |||||||||| |||| |||||||||||||||||| ||| |  ||  ||||||||||| | || ||||||| ||||||| |||||    
T  2277369 aaaaaaagatcaaagggttaaaattgaaaaaattaataaggtctatggtggactatctaccatgttggtccaccatagacatttggggttaaagttaac 2277467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 28562710 - 28562808
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaatt-aataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| |||||||| ||||||||||  |||||| ||||||||||||||| ||| |  ||||||||||||||| | |||| ||||| | ||||| |||||    
T  28562710 aaaaaaagatcaaagggttaaaattggaaaatttaataaggtctatggtggactatctataatgttggtccaccatatatatttgggattaaacttaac 28562808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 8537225 - 8537132
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaa-aaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||| ||||||||||||||||||| ||    ||||||| |||||||||  |||||||| || |||||| ||||||| |||||| |||||||||    
T  8537225 aaaaaaagatcaaatggttaaaattaaattttttaataaagtctatggtgaaccacttaaaaagttggtacatcttagacatttaaggttaaaa 8537132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 9474057 - 9474118
Alignment:
Q  206 ggaccaatttgactgacggatgtataattgaaggaccgaaacgtgggttttattagttatag 267  Q
    |||||| |||||||||| || ||||||||||  ||||||||||||||||| |||| ||||||    
T  9474057 ggaccactttgactgacagacgtataattgagtgaccgaaacgtgggtttcattatttatag 9474118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 26205218 - 26205133
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||||||||| |||||||||  |||||| |||||||| |||   |||| || |||| |||||||| |||||||    
T  26205218 atcaaatggttaaaatttaaaaaattaataaggcatatggtggaccacttttaagtatggttcaccttagacatttgatgttaaaa 26205133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 34147353 - 34147254
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaa--ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| |||||||| |||||||||| |||||  ||||||||||||||||| ||| |  ||  ||||||||||| | || ||||||| ||||||| |||||    
T  34147353 aaaaaaagatcaaagggttaaaattgaaaaaaattaataaggtctatggtggactatctaccatgttggtccaccatagacatttggggttaaagttaac 34147254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 18971227 - 18971294
Alignment:
Q  132 attaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||||||||||||  ||||||||  || |||||||||||| |||||| ||||  |||||||||||||    
T  18971227 attaataaggtctacagtagaccatctacaatgttggtccaccttatatattttgggttaaaattaac 18971294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 7753442 - 7753524
Alignment:
Q  117 ggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    |||| ||||| ||||||||||| |||||||||| || ||| || ||||||| |||| | ||||||||||  |||||| |||||    
T  7753442 ggtttaaattaaaaaattaatacggtctatggtggatcacctacaatgttgatccaccatatacatttggagttaaagttaac 7753524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 14509390 - 14509320
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggtt-aaaattaacgga 202  Q
    ||||||||||||||||| |||||| ||||| ||||||  | |||| |||||| ||||| ||||||||||||    
T  14509390 ttaataaggtctatggtggaccacctataaagttggtttaccttagacatttaaggttaaaaattaacgga 14509320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 29424523 - 29424605
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggtta 191  Q
    |||||| |||||||||||||||| ||||||||||||||| | |||||| | |||   |||| ||||||| |||||||| ||||    
T  29424523 atcaaaaggttaaaatttaaaaatttaataaggtctatgatggaccacctttaaacatggttcatcttagacatttgatgtta 29424605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 1083201 - 1083132
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtcca 172  Q
    ||||||||| ||||||||||||| | |||||||||||||||||   |||||||||| ||| |||| ||||    
T  1083201 aaatagatcgaatggttaaaattaacaaaattaataaggtctacaatagaccacttttaaggttgatcca 1083132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 10367420 - 10367359
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    |||||||||||||| || |||||| ||||| |||||| || |||| |||||| |||||||||    
T  10367420 ttaataaggtctattgtggaccacctataaagttggttcaccttagacatttaaggttaaaa 10367359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 21664989 - 21664920
Alignment:
Q  130 aaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||||| |||||||||| | |||||| || |||||||||||| | || |||||||| |||||| |||||    
T  21664989 aaattaacaaggtctatgattgaccacctacaatgttggtccaccatagacatttgaagttaaacttaac 21664920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 25570805 - 25570866
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| |||||| ||||| |||||| || |||| |||||| || ||||||    
T  25570805 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaagtttaaaa 25570866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 12959640 - 12959700
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaa 193  Q
    |||||||||||||| || |||||| ||||| |||||| || |||| |||||| ||||||||    
T  12959640 ttaataaggtctattgtggaccacctataaagttggttcaccttagacatttaaggttaaa 12959700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 17460613 - 17460685
Alignment:
Q  129 aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacgg 201  Q
    ||||||||||||||||| | |||||||||| |||  |||||||| | || |||||| | |||||| |||||||    
T  17460613 aaaattaataaggtctacgatagaccacttttaagattggtccaccatagacatttaaagttaaagttaacgg 17460685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 33 - 265
Target Start/End: Original strand, 5123178 - 5123410
Alignment:
Q  33 aaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatcaaatggttaaaatttaaaaa 132  Q
    ||||||||||||||||||||||||| | | |||||||||||| |||| ||||||||||||| ||| |  ||||||||||||||||||||||||| |||||    
T  5123178 aaataattagttgttgatggttcactgaatgatacaatagacctctgcgatccaacggttcatgtgttaaaaaatagatcaaatggttaaaattaaaaaa 5123277  T
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaacaggaccaatttgactgacggatgtataa 232  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| ||| ||| | ||||||    
T  5123278 ttaataaggtctatggtagaccacatacaatgttggtccatcttaaacatttgaggttaaaattaacagaacatgaccaatttaactaacgaacgtataa 5123377  T
Q  233 ttgaaggaccgaaacgtgggttttattagttat 265  Q
    |||  ||||  ||||||| ||||||||||||||    
T  5123378 ttgggggactaaaacgtgagttttattagttat 5123410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 193
Target Start/End: Original strand, 53624219 - 53624354
Alignment:
Q  58 cgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccact 157  Q
    |||| |||| ||||||||  ||| |||||||||||||  ||   ||||| |||||||| |||||||||| |||||||||||||||||||||| ||| |      
T  53624219 cgtaagataaaatagacacgtgtaatccaacggttctctttcttaaaaaaagatcaaaaggttaaaattgaaaaattaataaggtctatggtggactatc 53624318  T
Q  158 tataatgttggtccatcttatacatttgaggttaaa 193  Q
    ||||||||||||||| | |||||||||| |||||||    
T  53624319 tataatgttggtccaccatatacatttggggttaaa 53624354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 43346361 - 43346443
Alignment:
Q  113 aaatggttaaaatttaaaaattaa-taaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    |||||||||||||| ||||||| | ||||||||||||| |||||| ||||||||||||||| |||| ||||||  ||||||||    
T  43346361 aaatggttaaaattaaaaaatttagtaaggtctatggtggaccacctataatgttggtccaccttagacatttagggttaaaa 43346443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 21128130 - 21128045
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| ||||| ||  ||||||||||||| |||||| ||||||||||||||| |||| ||||||  ||||||||    
T  21128130 atcaaatggttaaaattaaaaaactttgtaaggtctatggtggaccacctataatgttggtccaccttagacatttagggttaaaa 21128045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 45421342 - 45421229
Alignment:
Q  82 atccaacggttcttgtttgcaaaaatagatcaaatggttaaaatttaaaa-attaataaggtctatggtagaccacttataatgttggtccatcttatac 180  Q
    |||||||||||||   || |||||| ||||||| ||||| ||||| |||| ||| |||||||||||||| |||||| | |||||||||| ||||||| ||    
T  45421342 atccaacggttctctatttcaaaaaaagatcaagtggtttaaattgaaaacatttataaggtctatggtggaccacctctaatgttggttcatcttagac 45421243  T
Q  181 atttgaggttaaaa 194  Q
    ||||  ||||||||    
T  45421242 atttatggttaaaa 45421229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 20314642 - 20314762
Alignment:
Q  80 tgatccaacggttcttgtttgcaaaaatagatcaaatggttaaaatttaa-aaattaataaggtctatggtagaccacttataatgttggtccatcttat 178  Q
    |||||||||||| ||  |||| ||||||| ||||||||||| ||||| || |||||||||||||||||||| ||| |  ||||||||||||| | | ||     
T  20314642 tgatccaacggtcctcttttgaaaaaataaatcaaatggtttaaattaaataaattaataaggtctatggtggactatctataatgttggtctaacatag 20314741  T
Q  179 acatttgaggttaaaattaac 199  Q
    |||||||  |||||| |||||    
T  20314742 acatttggagttaaacttaac 20314762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 48254800 - 48254888
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaatta 197  Q
    ||||| ||||||||||| ||||| ||| |||||| |||||| |||||| ||||||||||||||| |||| |||||| | ||||||||||    
T  48254800 atcaagtggttaaaattaaaaaacttagtaaggtttatggtggaccacctataatgttggtccaccttagacatttaatgttaaaatta 48254888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 20336534 - 20336655
Alignment:
Q  79 gtgatccaacggttcttgtttgcaaaaatagatcaaatggttaaaatttaa-aaattaataaggtctatggtagaccacttataatgttggtccatctta 177  Q
    ||||||||||||||||  |||  ||||||| ||  ||||||| ||||| || |||||||||||||||||||| ||| |  ||||||||||||||| | ||    
T  20336534 gtgatccaacggttctcttttaaaaaaataaattgaatggtttaaattaaataaattaataaggtctatggtggactatctataatgttggtccaacata 20336633  T
Q  178 tacatttgaggttaaaattaac 199  Q
     |||||||  |||||| |||||    
T  20336634 gacatttggagttaaacttaac 20336655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 21515512 - 21515609
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||||||||||||||| |  |||| ||||||||||||||| |||||| |||||| || ||| ||| |||| || |||||||||  |||||| |||||    
T  21515512 aaaaatagatcaaatggctggaattaaaaaattaataaggtatatggtggaccacctacaatattgatccacctaatacatttggagttaaagttaac 21515609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 21074188 - 21074264
Alignment:
Q  110 atcaaatggttaaaatttaaaa-attaataaggtctatggtagaccacttataatgttggtccatcttatacatttg 185  Q
    |||||| |||||||||| |||| |||||||||||||||||| ||| |  ||||||||||||||| | ||||||||||    
T  21074188 atcaaagggttaaaattgaaaaaattaataaggtctatggtggactatctataatgttggtccaccatatacatttg 21074264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 3209869 - 3209960
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||||||||| | |||||||||||||| || | | ||| | || ||| ||||||||| | ||||||||||| |||||||    
T  3209869 aaatagatcaaatggttaaaattaacaaaattaataaggtttacgatggactatttttaaggttggtccaccatatacatttgaagttaaaa 3209960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 48867336 - 48867426
Alignment:
Q  105 aatagatcaaatggttaaaatttaaaaatt-aataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||| ||||||||||||||  ||| || ||||| |||||||||||||||| || || |||||| || |||| |||||| |||||||||    
T  48867336 aatagataaaatggttaaaattacaaattttaataaagtctatggtagaccacctacaaagttggttcaccttagacatttaaggttaaaa 48867426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 35372062 - 35372151
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaa 192  Q
    ||||||||| ||||||||||||| | ||||||||||||||||| | | |||||||| |||  |||||||| | || |||||||| |||||    
T  35372062 aaatagatcgaatggttaaaattaacaaaattaataaggtctacgatggaccacttttaaaattggtccaacatagacatttgaagttaa 35372151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 10731094 - 10731002
Alignment:
Q  108 agatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| |||| |||||||| | |||||||||||||| |||| |||||||||| ||| |||||| || | || |||||||| |||||| |||||    
T  10731094 agatcgaatgattaaaattaacaaaattaataaggtatatgatagaccacttttaaggttggttcaccatagacatttgaagttaaagttaac 10731002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 52719793 - 52719861
Alignment:
Q  104 aaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtcca 172  Q
    ||||| ||||||||||||| ||| ||||  |||| |||| |||||| |||||| |||||||||||||||    
T  52719793 aaatatatcaaatggttaagattaaaaagctaatgaggtttatggtggaccacatataatgttggtcca 52719861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 46495683 - 46495612
Alignment:
Q  128 aaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    |||||||||||||||||||| | |||||| || ||||||||| || || ||||||||| | ||||| |||||    
T  46495683 aaaaattaataaggtctatgatggaccacctacaatgttggttcacctaatacatttgggtttaaagttaac 46495612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 25583395 - 25583333
Alignment:
Q  32 aaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttct 94  Q
    ||||||||||| |||||||||||||||||| | ||||| |||| | | | |||||||||||||    
T  25583395 aaaataattaggtgttgatggttcaccgtaaggtacaacagacctatataatccaacggttct 25583333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 47765643 - 47765597
Alignment:
Q  110 atcaaatggttaaaatttaaaaatt-aataaggtctatggtagacca 155  Q
    |||||| |||||||||||||||||| ||||||||||||||| |||||    
T  47765643 atcaaaaggttaaaatttaaaaattcaataaggtctatggtggacca 47765597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 7270512 - 7270439
Alignment:
Q  128 aaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacgg 201  Q
    |||| |||||||| ||||||||||||||||  ||| |||||||||    | ||||||||||||||| |||||||    
T  7270512 aaaagttaataagatctatggtagaccactcttaaggttggtccactacagacatttgaggttaaagttaacgg 7270439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 12106782 - 12106697
Alignment:
Q  109 gatcaaatggttaaaatttaa-aaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaa 193  Q
    ||||||| || ||||||| || |||||||||||||||| ||| ||||| |||||||  ||||||||  || |||||| ||||||||    
T  12106782 gatcaaagggataaaattgaataaattaataaggtctacggtggaccatttataatactggtccataatagacatttaaggttaaa 12106697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 41263851 - 41263782
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtcca 172  Q
    ||||||||| ||||||||||||| | |||||||||||||||||   |||||||||| ||| |||| ||||    
T  41263851 aaatagatcgaatggttaaaattaacaaaattaataaggtctagaatagaccacttttaaggttgatcca 41263782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 50809652 - 50809572
Alignment:
Q  14 agaagatgaagaaaggagaaaa-taattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttct 94  Q
    |||||||||||||| ||||||| ||||||| ||||| || ||||||||| |||| |||||||||  || |||||| ||||||    
T  50809652 agaagatgaagaaa-gagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggttct 50809572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 50866210 - 50866290
Alignment:
Q  14 agaagatgaagaaaggagaaaa-taattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttct 94  Q
    |||||||||||||| ||||||| ||||||| ||||| || ||||||||| |||| |||||||||  || |||||| ||||||    
T  50866210 agaagatgaagaaa-gagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggttct 50866290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 53420501 - 53420436
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaa 198  Q
    ||||||||||||||||| || ||||| ||| ||||||||| | || ||||||| ||||||| ||||    
T  53420501 ttaataaggtctatggtggatcacttttaaagttggtccaccatagacatttgtggttaaacttaa 53420436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 55423588 - 55423511
Alignment:
Q  122 aaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| |||||||||||||||||| ||| |||||| || || ||||||||| || | ||||||| |||| || |||||    
T  55423588 aaattaaaaaattaataaggtctacggtggaccacctacaaggttggtccacctaagacatttggggttgaagttaac 55423511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 18442454 - 18442366
Alignment:
Q  112 caaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    |||| |||||||||| || || ||||||||||||||||| ||| |   |||||||||||||| | || ||||||| ||||||| |||||    
T  18442454 caaagggttaaaattgaagaagttaataaggtctatggtggactatcgataatgttggtccaccatagacatttggggttaaacttaac 18442366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 19487528 - 19487440
Alignment:
Q  112 caaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    |||| |||||||||| || || ||||||||||||||||| ||| |   |||||||||||||| | || ||||||| ||||||| |||||    
T  19487528 caaagggttaaaattgaagaagttaataaggtctatggtggactatcgataatgttggtccaccatagacatttggggttaaacttaac 19487440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 35633422 - 35633346
Alignment:
Q  119 ttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaat 195  Q
    |||||||||||||||| |  |||||||||||||||||| |  ||||||| | || |||| ||||||  |||||||||    
T  35633422 ttaaaatttaaaaatttaataggtctatggtagaccacctgcaatgttgttacaccttagacatttatggttaaaat 35633346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 40244399 - 40244303
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||||||||||  ||||||||| | ||||||||||||||||| | | |||||||| |||  |||||||| | || ||| |||| |||||| |||||    
T  40244399 aaatagatcaaagagttaaaattaacaaaattaataaggtctacgatggaccacttttaagtttggtccaccatagacacttgaagttaaagttaac 40244303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 668689 - 668438
Alignment:
Q  14 agaagatgaagaaaggagaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatca 113  Q
    ||||||||||||||||  |||||||||||||||||||||||||  ||| |||||||||||| | | |||||||||| || ||||||  |||||||||||     
T  668689 agaagatgaagaaagggaaaaataattagttgttgatggttcattgtatgatacaatagacctttttgatccaacgttttttgttttgaaaaatagatct 668590  T
Q  114 aatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaacaggaccaat 213  Q
    |||||||||| || |||||||||||||||||||| |||||||  || ||||||| ||||||||| | ||||| |||||||||||||||||  ||||||||    
T  668589 aatggttaaatttaaaaaattaataaggtctatgatagaccatctacaatgttgttccatcttaaatatttggggttaaaattaacggaatgggaccaat 668490  T
Q  214 ttgactgacggatgtataattgaaggaccgaaacgtgggttttattagttat 265  Q
    |||| ||||||| ||| |||||  ||||| ||||||| ||||||||||||||    
T  668489 ttgaatgacggacgtaaaattgggggaccaaaacgtgagttttattagttat 668438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 13533162 - 13533259
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||| ||| |  ||||||||||||||| | || |||||||| |||||| |||||    
T  13533162 aaaaaaagatcaaatggttaaaattgaaaaattaataaggtctatggtggactatctataatgttggtccaccatagacatttgaagttaaatttaac 13533259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 34438616 - 34438526
Alignment:
Q  104 aaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||| ||| |  ||||||||| ||||| | || ||||||||||||||||    
T  34438616 aaatagatcaaatggttgaaattaaaaaattaataaggtctatggtggactatctataatgttagtccaccatagacatttgaggttaaaa 34438526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 43419191 - 43419371
Alignment:
Q  14 agaagatgaagaaaggagaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaa-aatagatc 112  Q
    |||||||||||||||| ||||| |||| |||||||  |||||||  ||||||||||||||||| | ||||| ||| |||||  ||   | | || |||||    
T  43419191 agaagatgaagaaaggggaaaa-aattggttgttggcggttcactatacgatacaatagacatgtatgatctaaccgttctcattaatagacaaaagatc 43419289  T
Q  113 aaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||| |||||||||| ||||  || |||| |||||||| |||||| |||||||||||| || |||||||||||  ||||||||    
T  43419290 aaagggttaaaattaaaaatctattaagatctatggtggaccacctataatgttggttcaccttatacatttatggttaaaa 43419371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 56296398 - 56296313
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||| ||| ||||||||||| |||| ||||||  ||||||||    
T  56296398 atcaaatggttaaaattaaaaaacttagtaaggtctatggtagaccacctatgatgttggtccaccttagacatttagggttaaaa 56296313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 27847891 - 27847795
Alignment:
Q  103 aaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    |||| |||||||| |||||||||| |||||||||||||||||||||| ||| |  |||||| |||| ||| | |||||||||| ||||||| |||||    
T  27847891 aaaaaagatcaaagggttaaaattgaaaaattaataaggtctatggtggactatctataatcttggcccaccatatacatttggggttaaacttaac 27847795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 40723443 - 40723345
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaa-aattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| |||||||| | |||| ||||||| |||||||| | ||||||||||||||||  ||| ||||||||| | |||||||||||||||||| |||||    
T  40723443 aaaaaaagatcaaacgattaacatttaaataattaataggatctatggtagaccactcttaaggttggtccaccatatacatttgaggttaaacttaac 40723345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 56085650 - 56085465
Alignment:
Q  14 agaagatgaagaaaggagaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatca 113  Q
    |||||||||||||||||  ||| |||||  |||||||||||||| ||| |||| |||| |||| ||||||||||||| || |  ||  ||||| | ||||    
T  56085650 agaagatgaagaaaggaataaagaattaagtgttgatggttcactgtaagataaaatacacatgtgtgatccaacgg-tcatccttttaaaaaaaaatca 56085552  T
Q  114 aatggttaaaatttaaa-aattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    || |||| ||||| ||| |||||||| | |||||||| |||||||  ||| ||| ||||| | || ||||||| ||||||| |||||    
T  56085551 aacggtttaaattaaaataattaataggatctatggtggaccactcttaaggttagtccaccatagacatttggggttaaagttaac 56085465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 26393038 - 26393113
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacattt 184  Q
    ||||||||||||||||| ||||| ||| ||||||||||||| |||||| |||||||||||| || |||| ||||||    
T  26393038 atcaaatggttaaaattaaaaaacttagtaaggtctatggtggaccacctataatgttggttcaccttagacattt 26393113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 56000492 - 56000417
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacattt 184  Q
    ||||||||||||||||| ||||| ||| ||||||||| ||| |||||| ||||||||||||||| |||| ||||||    
T  56000492 atcaaatggttaaaattaaaaaacttagtaaggtctacggtggaccacctataatgttggtccaccttagacattt 56000417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 6348370 - 6348272
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaa-attaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| |||||||| ||||||||||  ||| |||||||||||||| ||| |||||||  ||| ||||||||| | || ||||||||||||||| |||||    
T  6348370 aaaaaaagatcaaagggttaaaattagaaatattaataaggtctacggtggaccactcttaaggttggtccaccatagacatttgaggttaaacttaac 6348272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 194
Target Start/End: Original strand, 38555130 - 38555272
Alignment:
Q  54 tcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgca-aaaatagatcaaatggttaaaatttaaaaatt-aataaggtctatggtag 151  Q
    |||||||| |||| ||||||||| ||| |||||| ||||||  |||  | |||| |||||||| |||| ||||| ||||||| ||||| |||||||||||    
T  38555130 tcaccgtaagataaaatagacatgtgtaatccaatggttctcctttaaataaaaaagatcaaacggtttaaattaaaaaatttaataaagtctatggtag 38555229  T
Q  152 accacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||| || || |||||| || |||| |||||| || ||||||    
T  38555230 accacctacaaagttggttcaccttagacatttaagattaaaa 38555272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 36614249 - 36614185
Alignment:
Q  161 aatgttggtccatcttatacatttgaggttaaaattaacggaacaggaccaatttgactgacgga 225  Q
    |||||||||| |||||| |||||||  ||||||||||||| ||| |||||||||||| |||||||    
T  36614249 aatgttggtctatcttaaacatttggagttaaaattaacgaaacgggaccaatttgagtgacgga 36614185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 3533519 - 3533594
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacattt 184  Q
    ||||||||||||||||| ||||| ||| ||||||||||||| |||| | ||||||||||||| | |||| ||||||    
T  3533519 atcaaatggttaaaattaaaaaacttagtaaggtctatggtggaccgcctataatgttggtcgaccttagacattt 3533594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 4714230 - 4714139
Alignment:
Q  108 agatcaaatggttaaaatttaaaa-attaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaa 198  Q
    |||||||||||||||||||||||| |||||| | ||||||||| |||||||  ||| |||| |||| | || |||||||| |||||| ||||    
T  4714230 agatcaaatggttaaaatttaaaatattaatgaagtctatggtggaccactcttaaggttgatccaccatagacatttgaagttaaacttaa 4714139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 2162825 - 2162727
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| ||||||||  ||||||||| ||||| ||||||||||||||||| |||||| || |||||||||| | |||| | ||||  ||||||| |||||    
T  2162825 aaaaaaagatcaaagtgttaaaattgaaaaaattaataaggtctatggtggaccacctaaaatgttggtcaaccttacatatttagggttaaacttaac 2162727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 33231601 - 33231519
Alignment:
Q  106 atagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgagg 188  Q
    ||||||||||||||| ||||| |||||||||||  || |||||| |||||||| ||| ||| ||||| | || ||||||||||    
T  33231601 atagatcaaatggttgaaattaaaaaattaatagagtttatggtggaccacttctaaggtttgtccaccatagacatttgagg 33231519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 53401336 - 53401442
Alignment:
Q  53 ttcaccgtacgatacaatagacatctgtgatccaacggttct-tgtttgcaaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtag 151  Q
    ||||||||| | |||||||||| |   ||||||||||||| | | |||| ||||| ||||||||  ||||||||| ||||||| |  |||||||||||||    
T  53401336 ttcaccgtatgttacaatagacctacatgatccaacggttttctatttgaaaaaaaagatcaaacagttaaaattaaaaaatttaataggtctatggtag 53401435  T
Q  152 accactt 158  Q
    |||||||    
T  53401436 accactt 53401442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 1794629 - 1794548
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaatt-aataaggtctatggtagaccacttataatgttggtccatcttatacat 182  Q
    |||||| ||||||| |||| ||||| ||||||| ||||||||||||||| |||||||  ||| ||||||||| | |||||||    
T  1794629 aaaaattgatcaaacggtttaaattaaaaaatttaataaggtctatggtggaccactcttaaggttggtccaccatatacat 1794548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 29663847 - 29663758
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaa 198  Q
    ||||| ||||||||||| ||||  ||| |||||| |||||| |||||| |||||||||||| || |||| |||||| | |||||||||||    
T  29663847 atcaagtggttaaaattaaaaatcttagtaaggtttatggtggaccacctataatgttggttcaccttagacatttaatgttaaaattaa 29663758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 52633598 - 52633651
Alignment:
Q  103 aaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccac 156  Q
    |||| ||||||||| ||||||||  ||||||| |||||||||||||||||||||    
T  52633598 aaaaaagatcaaattgttaaaataaaaaaatttataaggtctatggtagaccac 52633651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 306780 - 306735
Alignment:
Q  110 atcaaatggttaaaatttaaaaattaataaggtctatggtagaccac 156  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  306780 atcaaagggttaaaatttaaaa-ttaataaggtctatgatagaccac 306735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 17494329 - 17494247
Alignment:
Q  113 aaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    |||||||||||||| | ||||||||||||||||||||| ||| |||| ||| |||| | ||  ||| |||||| |||||||||    
T  17494329 aaatggttaaaattcataaaattaataaggtctatggtggactacttttaacgttgtttcacgttagacatttaaggttaaaa 17494247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 37884178 - 37884276
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaatt-aataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| |||||||| ||||||||||  |||||| ||||||||||||||| ||| |  |||||| ||||| || | |||| ||||| ||||||| |||||    
T  37884178 aaaaaaagatcaaagggttaaaattggaaaatttaataaggtctatggtggactatatataatattggttcaccatatatatttggggttaaacttaac 37884276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 54485430 - 54485492
Alignment:
Q  14 agaagatgaagaaaggagaaaataattagttgttgatggttcaccgtacgatacaatagacat 76  Q
    ||||||||||||||| ||||| ||||||| ||||| ||  |||||||| |||| |||||||||    
T  54485430 agaagatgaagaaagaagaaattaattagatgttgttgactcaccgtaagatagaatagacat 54485492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 2311167 - 2311098
Alignment:
Q  104 aaatagatcaaatggttaaaatttaaaa-attaataaggtctatggtagaccacttataatgttggtcca 172  Q
    ||||||||| ||||||||||||| | || |||||||||||||| | |||||||||| |||  ||||||||    
T  2311167 aaatagatcgaatggttaaaattaacaatattaataaggtctacgatagaccacttttaagattggtcca 2311098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 11114915 - 11114976
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||| |||||||||||||||| || || |||||| || |||| |||||| |||||||||    
T  11114915 ttaataaagtctatggtagaccacctacaaagttggttcagcttagacatttaaggttaaaa 11114976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 28657039 - 28657116
Alignment:
Q  122 aaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| |||||||||||||||||| ||| || ||| || || ||||||||| || | ||||||| ||||||| |||||    
T  28657039 aaattaaaaaattaataaggtctacggtggatcacctacaaggttggtccacctaagacatttggggttaaagttaac 28657116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 50547118 - 50547066
Alignment:
Q  106 atagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccactt 158  Q
    ||||||||||||||| ||||| |||||||||||  || |||||| ||||||||    
T  50547118 atagatcaaatggttgaaattaaaaaattaatagagtttatggtggaccactt 50547066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 54484544 - 54484464
Alignment:
Q  14 agaagatgaagaaaggagaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttct 94  Q
    ||||||||||||||| | ||| ||||||| ||||| ||| |||||||| |||| |||| || |||||  ||||| ||||||    
T  54484544 agaagatgaagaaagaaaaaattaattagatgttgttggctcaccgtaagatagaataaacctctgtattccaatggttct 54484464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 136814 - 136719
Alignment:
Q  130 aaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaacaggaccaatttgactgacgga 225  Q
    ||||||||||||||||||||||||||||||  |||| |||||| |||| |||||||| |||||||||||||||| | ||| ||||||||| |||||    
T  136814 aaattaataaggtctatggtagaccacttaccatgtcggtccaccttagacatttgatgttaaaattaacggaatatgactaatttgactaacgga 136719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 7312184 - 7312281
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| ||||||||||||| ||||| ||||||||||||| |||| |||  ||||| || ||||||||||||||| ||||||||| ||||||| |||||    
T  7312184 aaaaaaagatcaaatggttgaaattaaaaaattaataagatctacggtgaaccacctacaatgttggtccatctaatacatttggggttaaagttaac 7312281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 30231665 - 30231576
Alignment:
Q  130 aaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaacaggaccaatttgact 219  Q
    ||||||| |||||||||||| |||||||||  |||||||| || |||| |||||||| |||||||||||||||| ||||| |||||||||    
T  30231665 aaattaacaaggtctatggtggaccacttaccatgttggttcaccttagacatttgatgttaaaattaacggaataggactaatttgact 30231576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 24757092 - 24757000
Alignment:
Q  108 agatcaaatggttaaaatttaaa-aattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||||||| ||||||||| ||| ||||||||||||||| |||||||||| || ||||||| ||||||| |||| |||| ||||||| |||||    
T  24757092 agatcaaattgttaaaattaaaagaattaataaggtctaaggtagaccacctacaatgttgctccatctaatacttttgtggttaaagttaac 24757000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 29380404 - 29380306
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacgg 201  Q
    ||||||||| ||||||||||||| | ||||||||||||||||| | | ||| |||| ||| |||| |||| | ||||||||||| ||||||||||||||    
T  29380404 aaatagatcgaatggttaaaattaacaaaattaataaggtctacgatggactacttttaaggttgatccaccatatacatttgaagttaaaattaacgg 29380306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 32505884 - 32505786
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaa--ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    |||||||||||||| |||| ||| |||||||  ||||||||||||||||| |||||||  ||||||| ||||||  || ||||||| ||||||| |||||    
T  32505884 aaaaatagatcaaacggtttaaacttaaaaaatttaataaggtctatggtggaccactcttaatgtt-gtccattatagacatttggggttaaacttaac 32505786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 23397257 - 23397355
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacgg 201  Q
    |||||||||  |||||||||||| | |||||||||||||| || ||| ||| |||| ||| ||||||||| | || |||||||| |||||| |||||||    
T  23397257 aaatagatcggatggttaaaattaacaaaattaataaggtatacggtggactacttttaaggttggtccaccatagacatttgaagttaaatttaacgg 23397355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 293575 - 293636
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| |||||| ||||| |||||| || |||| |||||| |||||||||    
T  293575 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaa 293636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 14328709 - 14328770
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| |||||| ||||| |||||| || |||| |||||| |||||||||    
T  14328709 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaa 14328770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 14421719 - 14421780
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| |||||| ||||| |||||| || |||| |||||| |||||||||    
T  14421719 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaa 14421780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 9927802 - 9927716
Alignment:
Q  117 ggttaaaatttaaaaat-taataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggtt-aaaattaacgga 202  Q
    |||||||||| |||||| |||||| |||| ||||||||||| || || |||||| ||||||| |||||| ||||| ||||||||||||    
T  9927802 ggttaaaattaaaaaatgtaataaagtct-tggtagaccacctacaaagttggttcatcttagacatttaaggttaaaaattaacgga 9927716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 27082081 - 27082168
Alignment:
Q  108 agatcaaatggttaaaatttaa-aaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||| ||||||| || |||||||||||||||| ||| || ||  ||| ||||||||||| | ||||||||||  |||||||    
T  27082081 agatcaaatggctaaaattaaataaattaataaggtctacggtggatcatgtattatgttggtccaccatatacatttggagttaaaa 27082168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 232405 - 232325
Alignment:
Q  14 agaagatgaagaaaggagaaaa-taattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttct 94  Q
    |||||||||||||| ||||||| ||||||| ||||| || ||||||||| |||| |||||||||  || |||||| ||||||    
T  232405 agaagatgaagaaa-gagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggttct 232325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 15728917 - 15728848
Alignment:
Q  130 aaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||||||| |||||||||| ||| |  ||||||||||||||| | || | ||||||||||||| |||||    
T  15728917 aaattaatagggtctatggtggactatctataatgttggtccaccatagatatttgaggttaaacttaac 15728848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 18558716 - 18558656
Alignment:
Q  14 agaagatgaagaaagga-gaaaataattagttgttgatggttcaccgtacgatacaataga 73  Q
    ||||||||||||||||| |||||||||||||| ||| |||| | ||||| | |||||||||    
T  18558716 agaagatgaagaaaggaagaaaataattagtttttgttggtacgccgtaagttacaataga 18558656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 22298816 - 22298724
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||| |||||||| ||||||| |  |||  ||||||| || ||||||||||||| | ||| ||| ||||| |||| |||||| |||||||||    
T  22298816 aaaaaaagatcaaacggttaaattaaaaattttaataaagtttatggtagaccacctgtaaagttcgtccaccttagacatttaaggttaaaa 22298724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 9662138 - 9662235
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||| ||| |  ||||||||||||||| | || |||||||| |||||| |||||    
T  9662138 aaaaaaagatcaaatggttaaaattgaaaaattaataaggtctatggtggactatctataatgttggtccaccatagacatttgaagttaaatttaac 9662235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 26135828 - 26135733
Alignment:
Q  130 aaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaacaggaccaatttgactgacgga 225  Q
    |||||||||||||||||||| |||||||||  |||| ||||||||||| |||||||| ||||||||||||  || ||||| ||||||||| |||||    
T  26135828 aaattaataaggtctatggtggaccacttaccatgtcggtccatcttagacatttgatgttaaaattaacataataggactaatttgactaacgga 26135733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 26406425 - 26406245
Alignment:
Q  14 agaagatgaagaaa-ggagaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatc 112  Q
    |||||||||||||| |||||||| |||||| ||||||| |||||| ||| ||||||| |||||| | |||||||||||||||  |||  ||||| | |||    
T  26406425 agaagatgaagaaatggagaaaa-aattaggtgttgattgttcactgtatgatacaacagacatatatgatccaacggttctcttttttaaaaa-atatc 26406328  T
Q  113 aaatggttaaaatttaa-aaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||| |||||||||| ||  |||| ||||  |||||||| |||||| || || |||||| || |||| |||||| |||||||||    
T  26406327 aaagggttaaaattaaatgaatttataatatctatggtggaccacctacaaagttggttcaccttagacatttaaggttaaaa 26406245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 35484126 - 35484306
Alignment:
Q  14 agaagatgaagaaaggagaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaa-aatagatc 112  Q
    ||||||||||||||   ||||| |||| |||||||  |||||||  ||||||||||||||||| | ||||| ||| |||||  |||  ||| || |||||    
T  35484126 agaagatgaagaaattggaaaa-aattggttgttggcggttcactatacgatacaatagacatgtatgatctaactgttctcatttataaacaaaagatc 35484224  T
Q  113 aaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||| |||||||||| ||||  || |||| |||||||| |||||| |||||||||||| || |||| ||||||  ||||||||    
T  35484225 aaagggttaaaattaaaaatctattaagatctatggtggaccacctataatgttggttcaccttagacatttagggttaaaa 35484306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 7354688 - 7354602
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaacaggaccaatttgact 219  Q
    ||||||||||||| | | ||||||||||||||||||||||||||| ||||||| ||||||| ||||  |||  ||||||| ||||||    
T  7354688 ttaataaggtctacgatggaccacttataatgttggtccatcttagacatttgtggttaaagttaattgaagtggaccaaattgact 7354602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 28325284 - 28325192
Alignment:
Q  103 aaaatagatcaaatggttaaaatttaaaaatt-aataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    |||| |||||||| |||| |||||||||| || ||||| |||||||||||||||| || || ||||||||| |||| |||||| || ||||||    
T  28325284 aaaaaagatcaaacggtttaaatttaaaattttaataaagtctatggtagaccacctacaaagttggtccaccttagacatttaagattaaaa 28325192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 16756079 - 16755989
Alignment:
Q  110 atcaaatggttaaaatttaaa-aattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||||||||||||||| ||| |||||||| | |||||||||||| |||| ||| |||| | || | || ||||||||||||||| |||||    
T  16756079 atcaaatggttaaaattaaaataattaataggatctatggtagacaacttttaaggttgtttcaccatagacatttgaggttaaagttaac 16755989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 225
Target Start/End: Original strand, 3332064 - 3332181
Alignment:
Q  109 gatcaaatggttaaaatttaa-aaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaacagg 207  Q
    ||||||| || ||||||| || ||||||||||||| ||||||  | ||||||  || ||||| || |||| |||||| | |||||||||||||||| |||    
T  3332064 gatcaaagggctaaaattaaataaattaataaggtatatggtgtatcacttaccatattggtgcaccttaaacatttaatgttaaaattaacggaagagg 3332163  T
Q  208 accaatttgactgacgga 225  Q
    || ||| ||||| |||||    
T  3332164 actaatatgactaacgga 3332181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 11501393 - 11501297
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||||||| ||||||||||||| | |||||||||||||||||   |  ||||||| ||| ||||||||| | || |||||||| |||||| |||||    
T  11501393 aaatagatcgaatggttaaaattaacaaaattaataaggtctacaatgaaccacttttaaggttggtccaccatagacatttgaagttaaagttaac 11501297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 45719820 - 45719745
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacattt 184  Q
    ||||| ||||||||||| ||||| ||| |||||| |||||| || ||| ||||||||||||||| |||| ||||||    
T  45719820 atcaattggttaaaattaaaaaacttagtaaggtttatggtggagcacctataatgttggtccaccttagacattt 45719745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 25154846 - 25154932
Alignment:
Q  109 gatcaaatggttaaaatttaaaaatt-aataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||| |||||||| | ||| ||| |||||| | |||||| |||||||||||| |||||| || |||| |||||| |||||||||    
T  25154846 gatcaaacggttaaaaataaaagatttaataagttttatggtggaccacttataaagttggttcaccttagacatttaaggttaaaa 25154932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 46458648 - 46458709
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| ||| || ||||| |||||| || |||| |||||| |||||||||    
T  46458648 ttaataaggtctatggtggactacctataaagttggttcaccttagacatttaaggttaaaa 46458709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 44554696 - 44554791
Alignment:
Q  129 aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaacaggaccaatttgactgacgga 225  Q
    |||||||||||| |||| ||| ||||| |||||||||||||||| | || |||||||  |||||| ||||  ||   ||| ||||||||||||||||    
T  44554696 aaaattaataagatctacggtggacca-ttataatgttggtccaccatagacatttggagttaaagttaatagacttggatcaatttgactgacgga 44554791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 16757456 - 16757569
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaacaggaccaatttgactgacggatgtataa 232  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||| ||||| |||    | ||| |||||| ||||| |||||     
T  16757456 ttaataaggtctatgatggaccacttataatgttggtccatcttagacatttgtggttaaagttaacagaagcaaatcaaattgactaacggaggtatat 16757555  T
Q  233 ttgaaggaccgaaa 246  Q
     |||||||||||||    
T  16757556 ctgaaggaccgaaa 16757569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 19466109 - 19466201
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| | ||||| |||||||||||||||||||||| ||| |  ||||||||| ||||| | || ||||||||||||||||    
T  19466109 aaaaatagatcaaatggctgaaattaaaaaattaataaggtctatggtggactatctataatgttagtccaccatagacatttgaggttaaaa 19466201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 51300160 - 51300252
Alignment:
Q  102 aaaaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaa 193  Q
    ||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||| ||||||||||||| |||  ||| || ||||||||    
T  51300160 aaaaatatatcaaatggttaaaattcataaaattaataaggtctatggtggaccacttttaatgttggtccacctttgacacttaaggttaaa 51300252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 36510022 - 36509931
Alignment:
Q  103 aaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||| ||  |  ||||||||| ||||| | || ||||||||||||||||    
T  36510022 aaaatagatcaaatggctaaaattaaaaaattaataaggtctatggtggaatatctataatgttagtccaccatagacatttgaggttaaaa 36509931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 48096932 - 48097030
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaa-aattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||| |||||||| | |||| ||||||| |||||||| | ||||||||||||||||  ||| ||||||||| | |||||||||||||||||| |||||    
T  48096932 aaaaaaagatcaaacgattaatatttaaataattaataggatctatggtagaccactcttaaggttggtccaccatatacatttgaggttaaacttaac 48097030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 15746662 - 15746764
Alignment:
Q  97 tttgcaaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaatt 196  Q
    |||| |||||||||||||| |||||||||| ||| ||||||| | |||||||| |||||||  |||  |||||||| | || |||||||| |||||| ||    
T  15746662 tttgtaaaaatagatcaaagggttaaaattaaaagattaataggatctatggtggaccactcttaagattggtccaccatagacatttgaagttaaactt 15746761  T
Q  197 aac 199  Q
    |||    
T  15746762 aac 15746764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 16964047 - 16963966
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacattt 184  Q
    ||||||||| || |||||||||| | ||||||||||||||||||| | |||||||| ||| ||||||||||| || ||||||    
T  16964047 aaatagatcgaagggttaaaattaacaaaattaataaggtctatgatggaccacttttaaggttggtccatcataaacattt 16963966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 30535570 - 30535654
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttga 186  Q
    ||||| |||||| | |||||||||| |||||| ||||||||||||||| ||| |  ||||||||||||||| | || ||||||||    
T  30535570 aaaaaaagatcagagggttaaaattaaaaaataaataaggtctatggtggactatctataatgttggtccaccatagacatttga 30535654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 38965195 - 38965259
Alignment:
Q  129 aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaa 193  Q
    |||||||||||||| ||||||||||||||| |||| |||||| | ||||||||||| || |||||    
T  38965195 aaaattaataaggtttatggtagaccacttttaatattggtctaccttatacatttaagattaaa 38965259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 41873877 - 41873969
Alignment:
Q  108 agatcaaatggttaaaattt-aaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    |||||||| ||||||||||| |||||||||| | ||||||||| |||||||  ||| ||||||||| | || ||||||| ||||||| |||||    
T  41873877 agatcaaacggttaaaatttaaaaaattaatgaagtctatggtggaccactcttaaggttggtccaccatagacatttgtggttaaacttaac 41873969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 34258627 - 34258709
Alignment:
Q  117 ggttaaaatttaa-aaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaa 198  Q
    |||||||||| || ||||||||||||| |||||| |||| | || |||||||||||| |||| | |||| |||||||||||||    
T  34258627 ggttaaaattaaataaattaataaggtttatggtggaccgcatacaatgttggtccaccttagatattttaggttaaaattaa 34258709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 7161229 - 7161294
Alignment:
Q  108 agatcaaatggttaaaattt-aaaaattaataaggtctatggtagaccacttataatgttggtcca 172  Q
    ||||| |||||||||||||| |||||||| ||||||||||||| ||| |  |||||||||||||||    
T  7161229 agatctaatggttaaaattttaaaaattattaaggtctatggtggactatctataatgttggtcca 7161294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 15743540 - 15743416
Alignment:
Q  13 gagaagatgaagaaaggagaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatc 112  Q
    |||||||||||||||| | ||| ||||||||||||| ||  ||||| || |||| |||| |     || ||||||| |||||  |||| |||||||||||    
T  15743540 gagaagatgaagaaagaaaaaattaattagttgttgttgactcaccataagataaaatacatccgcgtaatccaaccgttctcttttgaaaaaatagatc 15743441  T
Q  113 aaatggttaaaatttaaaaattaata 138  Q
    ||| |||||||| |||||||||||||    
T  15743440 aaagggttaaaa-ttaaaaattaata 15743416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 46467449 - 46467264
Alignment:
Q  14 agaagatgaagaaaggagaaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatca 113  Q
    ||||||||||||||| |  ||| |||||||||||| |||| ||||||| | |||||||||||  | | || ||| |||  |  |||   |||||| ||||    
T  46467449 agaagatgaagaaagaaagaaagaattagttgttgttggtgcaccgtaagttacaatagacacgtataattcaatggtcatctttttagaaaatatatca 46467350  T
Q  114 aatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    || |||| ||||| |||| |||||||  |||| ||| || ||||| ||||||||||||| | || ||||||  ||||||| |||||    
T  46467349 aacggtttaaattaaaaatttaataacatctacggtggatcacttttaatgttggtccaccatagacatttatggttaaacttaac 46467264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 47762076 - 47762015
Alignment:
Q  134 taataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaat 195  Q
    ||||||||||   |||||||||| ||  ||||||||||||||||||||||| ||||||||||    
T  47762076 taataaggtcacgggtagaccacctacgatgttggtccatcttatacattttaggttaaaat 47762015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 51042240 - 51042343
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaa-aaattaataaggtctatggtagaccacttataatgt---tggtccatcttatacatttgaggttaaaatta 197  Q
    ||||| |||||||| |||| ||||| || |||||||| |||||||||||||||||| || |||||   | ||||||| || ||||||||||||| | |||    
T  51042240 aaaaaaagatcaaacggtttaaattaaacaaattaatgaggtctatggtagaccacctacaatgtttgtagtccatcatagacatttgaggttatactta 51042339  T
Q  198 acgg 201  Q
    ||||    
T  51042340 acgg 51042343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 51726779 - 51726840
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| |||||| ||||| |||||| || |||| |||||| |||||||||    
T  51726779 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaa 51726840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 835489 - 835390
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacgg 201  Q
    ||||| |||||||| |||||||||| ||||||| ||| |||||||| | ||| |  |||||||||||| |||| || | |||||| |||||| |||||||    
T  835489 aaaaaaagatcaaagggttaaaattgaaaaatttata-ggtctatgatggacaatctataatgttggttcatcataaatatttgaagttaaagttaacgg 835391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 9226027 - 9226214
Alignment:
Q  14 agaagatgaagaaaggagaaaat-aattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatc 112  Q
    |||| |||||||||| ||||||| |||||| |||| |||  |||||||| |||| |||||||||  |||||  || ||||||  |||   |||| |||||    
T  9226027 agaaaatgaagaaag-agaaaattaattagatgttaatgactcaccgtaagataaaatagacatgcgtgatttaatggttctcttttaataaaaaagatc 9226125  T
Q  113 aaatggttaaaatttaaa-aattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacg 200  Q
    |||   || ||||| ||| |||||||| | |||||||| |||||||| ||| |||| |||| | || ||||||||||||||| ||||||    
T  9226126 aaacaatttaaattaaaataattaataggatctatggtggaccacttttaaggttgatccaccatagacatttgaggttaaatttaacg 9226214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 21507280 - 21507197
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttg 185  Q
    ||||| |||||||| || | ||||| |||||||||||||||||| | | |||||| || | |||||||||| || |||||||||    
T  21507280 aaaaaaagatcaaacggctgaaattaaaaaattaataaggtctacgatggaccacctacattgttggtccacctaatacatttg 21507197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 9633980 - 9633895
Alignment:
Q  110 atcaaatggttaaaatttaaaaatt-aataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    |||||| ||| |||||||||||||| ||||||||||||||| |||||| | |||   |||| || |||| |||||||| |||||||    
T  9633980 atcaaagggtcaaaatttaaaaatttaataaggtctatggtggaccacctttaaacatggttcaccttagacatttgatgttaaaa 9633895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 21277175 - 21277114
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| |||||| ||||| |||||| || |||| |||||| |||| ||||    
T  21277175 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggtcaaaa 21277114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 48492916 - 48492820
Alignment:
Q  129 aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa-ttaacggaacaggaccaatttgactgacgga 225  Q
    |||||||||||| |||| ||| ||||| |||||||||||||||| | || |||||||  ||||||| ||||| ||   ||| ||||||||||||||||    
T  48492916 aaaattaataagatctacggtggacca-ttataatgttggtccaccatagacatttggagttaaaagttaacagacttggatcaatttgactgacgga 48492820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 51042753 - 51042866
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaacaggaccaatttgactgacggatgtataa 232  Q
    ||||||||||||| | |  || ||||||||||||||| ||||||| ||| ||| ||||||| ||||| |||  ||| ||| |||| | |||||  ||||     
T  51042753 ttaataaggtctacgatgaactacttataatgttggtacatcttacacacttgtggttaaagttaacagaaacggatcaaattgattaacggagatatat 51042852  T
Q  233 ttgaaggaccgaaa 246  Q
    |||||||| |||||    
T  51042853 ttgaaggatcgaaa 51042866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 8092779 - 8092719
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaa 193  Q
    ||||||||||||||||| |||||| ||||| |||||| || |||| | |||| ||||||||    
T  8092779 ttaataaggtctatggtggaccacctataaagttggttcaccttagatatttaaggttaaa 8092719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 13642461 - 13642553
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||| |||||||| ||||||| |  |||  ||||||| || ||||||||||||| | ||| ||| ||||| |||| |||||| |||||||||    
T  13642461 aaaaaaagatcaaacggttaaattaaaaattttaataaagtttatggtagaccacctgtaaagttcgtccaccttagacatttaaggttaaaa 13642553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 32694043 - 32693947
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    |||||||||||| |||||||||| | ||||||||||||||||||| ||| |||||| ||| ||||||||||| ||||||||| | |||||| |||||    
T  32694043 aaatagatcaaacggttaaaattaataaaattaataaggtctatgataggccacttttaaggttggtccatcatatacatttaaagttaaagttaac 32693947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 24069357 - 24069432
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacattt 184  Q
    ||||||||||||||||| ||||| ||| ||||||||||||| |||||| ||||||||||||||| |||| ||||||    
T  24069357 atcaaatggttaaaattaaaaaacttagtaaggtctatggtggaccacctataatgttggtccaccttagacattt 24069432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 13513625 - 13513540
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| ||||| |||||||||| |||||| |||||||| |||   |||| |||||||||||||||| |||||||    
T  13513625 atcaaatggttaaaattaaaaaaattaataaggtatatggtggaccacttttaaatatggttcatcttatacatttgatgttaaaa 13513540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 13603158 - 13603073
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| ||||| |||||||||| |||||| |||||||| |||   |||| |||||||||||||||| |||||||    
T  13603158 atcaaatggttaaaattaaaaaaattaataaggtatatggtggaccacttttaaatatggttcatcttatacatttgatgttaaaa 13603073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 34617106 - 34617191
Alignment:
Q  110 atcaaatggttaaaatttaaaaattaa-taaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| ||||||| | ||||||||| ||| |||||| | ||||||||||||| |||||||||||  ||||||||    
T  34617106 atcaaatggttaaaattaaaaaatttagtaaggtctacggtggaccacctgtaatgttggtccaccttatacatttagggttaaaa 34617191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 7770809 - 7770884
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacattt 184  Q
    ||||||||||||||||| ||||| ||| ||||||||||||  |||||| ||||||||||||||| |||| ||||||    
T  7770809 atcaaatggttaaaattaaaaaacttagtaaggtctatggaggaccacctataatgttggtccaccttagacattt 7770884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 7796719 - 7796794
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacattt 184  Q
    ||||||||||||||||| ||||| ||| ||||||||||||  |||||| ||||||||||||||| |||| ||||||    
T  7796719 atcaaatggttaaaattaaaaaacttagtaaggtctatggaggaccacctataatgttggtccaccttagacattt 7796794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 7816000 - 7816075
Alignment:
Q  110 atcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccacttataatgttggtccatcttatacattt 184  Q
    ||||||||||||||||| ||||| ||| ||||||||||||  |||||| ||||||||||||||| |||| ||||||    
T  7816000 atcaaatggttaaaattaaaaaacttagtaaggtctatggaggaccacctataatgttggtccaccttagacattt 7816075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 39515404 - 39515329
Alignment:
Q  110 atcaaatggttaaaatt-taaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacattt 184  Q
    ||||||||||||||||| ||||| ||| ||||||||||| | |||||| ||||||||||||||| |||| ||||||    
T  39515404 atcaaatggttaaaattataaaacttagtaaggtctatgatggaccacctataatgttggtccaccttagacattt 39515329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 172
Target Start/End: Original strand, 44076200 - 44076332
Alignment:
Q  40 tagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatcaaatggttaaaatt-taaaaattaata 138  Q
    |||||||||||| |||||  || ||||||||| || || |||||| |||||||| |||||  | ||||||||||||||||| |||||  |||||||||||    
T  44076200 tagttgttgatgattcactatatgatacaataaacctc-gtgatcaaacggttcgtgttttaataaatagatcaaatggtttaaattaaaaaaattaata 44076298  T
Q  139 aggtctatggtagaccacttataatgttggtcca 172  Q
    || | |||||| || || || |||||||| ||||    
T  44076299 agatttatggtggatcatttttaatgttgttcca 44076332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 42100009 - 42100105
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||||||| ||||||||||||| | ||||||||||||||||| | | |||||||| ||| ||||||||| |  | |||||||| |||||| |||||    
T  42100009 aaatagatcgaatggttaaaattaacaaaattaataaggtctacgatggaccacttttaaggttggtccaccaaagacatttgaagttaaagttaac 42100105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 38696908 - 38696999
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaa 193  Q
    ||||| |||||||| | |||||||| |||||||||| ||||||||||| ||| |  |||||||||||||||   || | |||||||||||||    
T  38696908 aaaaaaagatcaaaggattaaaattgaaaaattaattaggtctatggtggactatctataatgttggtccacaatagaaatttgaggttaaa 38696999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 42877838 - 42877736
Alignment:
Q  97 tttgcaaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaatt 196  Q
    |||| |||||||||||||| |||| ||||| || |||||||| | |||||||| ||||| |  ||| ||||||||| | || ||||||| ||||||| ||    
T  42877838 tttggaaaaatagatcaaagggttgaaattaaataattaataggatctatggtggaccattcttaaggttggtccaccatacacatttggggttaaagtt 42877739  T
Q  197 aac 199  Q
    |||    
T  42877738 aac 42877736  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 13366985 - 13367046
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| |||||| ||||| |||||| || |||| |||||| |||||||||    
T  13366985 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaa 13367046  T

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Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 39220864 - 39220799
Alignment:
Q  129 aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||||||||||| |||| |||| ||| | || |||| |||||| |||||||||    
T  39220864 aaaattaataaggtctatggtagactacttttaatattgtttcaccttagacatttaaggttaaaa 39220799  T

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Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 44606352 - 44606259
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaatt-aataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||| |||||||| |||||||| | ||| ||| || |||||||||||| |||||| ||||| |||||| || |||| |||||| |||||||||    
T  44606352 aaaaaaagatcaaacggttaaaaataaaagatttaacaaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaa 44606259  T

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Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 6397998 - 6397942
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaa-ttaataaggtctatggtagaccact 157  Q
    ||||| ||||||||||||| ||||| ||||| ||||||||||||||||| |||||||    
T  6397998 aaaaacagatcaaatggtttaaattaaaaaaattaataaggtctatggtggaccact 6397942  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 42872117 - 42872188
Alignment:
Q  128 aaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||||||||| | ||||||||||||||||  ||| ||||||| | | || ||||||||||||||| |||||    
T  42872117 aaaaattaataggatctatggtagaccactcttaaggttggtctaccatagacatttgaggttaaagttaac 42872188  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 45395171 - 45395112
Alignment:
Q  113 aaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtcca 172  Q
    |||||||| ||||||||||||||||| |||||||| | |||||| || ||| ||||||||    
T  45395171 aaatggtttaaatttaaaaattaatacggtctatgatggaccacctacaatattggtcca 45395112  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 32797354 - 32797256
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacgg 201  Q
    ||||||||| ||||||||||||| | ||||||||||||||||| | |  |||| || ||| |||| |||||| || |||||||  |||||| |||||||    
T  32797354 aaatagatcgaatggttaaaattaacaaaattaataaggtctacgatgaaccatttttaaggttgatccatcatagacatttggagttaaacttaacgg 32797256  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 36938963 - 36938869
Alignment:
Q  32 aaaataattagttgttgatggttcaccgtacgatacaatagacatctgtgatccaacggttcttgtttgcaaaaatagatcaaatggttaaaatt 126  Q
    |||| |||||| |||||||| |||||| || ||||||| |||| | | |||||||||||||||  |||  ||||| | |||||| ||||||||||    
T  36938963 aaaaaaattaggtgttgatgattcaccttaagatacaacagacctatatgatccaacggttctcctttttaaaaaaatatcaaagggttaaaatt 36938869  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 14840807 - 14840896
Alignment:
Q  110 atcaaatggttaaaatttaaaaatt-aataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaa 198  Q
    |||||| |||| ||||| ||||||| ||||||  ||||||| || ||||| ||||||||||||| | || ||||||| ||||||| ||||    
T  14840807 atcaaacggtttaaattaaaaaatttaataagaactatggtggatcacttttaatgttggtccaccatagacatttgtggttaaacttaa 14840896  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 38696516 - 38696455
Alignment:
Q  110 atcaaatggttaaaatt-taaaaattaataaggtctatggtagaccacttataatgttggtc 170  Q
    |||||| |||||||||| ||||||||||| || |||||||| |||||||| ||| |||||||    
T  38696516 atcaaagggttaaaattataaaaattaattagatctatggtggaccacttttaaggttggtc 38696455  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 45279893 - 45279812
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacattt 184  Q
    ||||||||| ||||||||||||| | ||||||| ||||||||| | |||||||||| |||   ||||||| | |||||||||    
T  45279893 aaatagatcgaatggttaaaattaacaaaattattaaggtctacgatagaccacttttaagactggtccaccatatacattt 45279812  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 36070359 - 36070303
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggt 189  Q
    ||||||||||||||||| |||||| ||||| |||||| || |||| |||||| ||||    
T  36070359 ttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggt 36070303  T

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Target: scaffold2071 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 581 - 673
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaatt-aataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaa 193  Q
    ||||| |||||||| |||| ||||| ||||||| ||||||||||||||| |||||||  ||| ||||||||||  ||||||||||||||||||    
T  581 aaaaacagatcaaacggtttaaattaaaaaatttaataaggtctatggtggaccactcttaaggttggtccattatatacatttgaggttaaa 673  T

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Target: scaffold0178 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 1422 - 1331
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||| |||||||| |||||||||| |||||||||||| |||||||||||| | ||||||| |||||| || |||| |||||| |||||||||    
T  1422 aaaaaaagatcaaacggttaaaattaaaaaattaataaagtctatggtagatc-cttataaagttggttcaccttaaacatttaaggttaaaa 1331  T

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Target: scaffold0148 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 14916 - 14820
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaaaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaa 198  Q
    ||||||||||||||||| | ||||| |||||||||||| ||||||||| || ||  |||||| |||||||||| || ||||| ||||||||| ||||    
T  14916 aaaaatagatcaaatggcttaaattaaaaaattaataatgtctatggtggatcatctataatattggtccatcatagacattagaggttaaagttaa 14820  T

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Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 109648 - 109743
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaa 198  Q
    ||||||||||||||||||||||| | ||||||||||||||||| | | ||| | || ||| ||||||||| | ||||||||||| |||||| ||||    
T  109648 aaatagatcaaatggttaaaattaacaaaattaataaggtctacgatggactatttttaaggttggtccaccatatacatttgaagttaaagttaa 109743  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 225
Target Start/End: Original strand, 151966 - 152084
Alignment:
Q  108 agatcaaatggttaaaatttaaaaat-taataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacggaacag 206  Q
    |||||||| |||||||| |||||||| | || |||||| |||| |||||| ||||||||||||| |||||| | ||||  ||||||||||||| ||  ||    
T  151966 agatcaaacggttaaaaattaaaaatctgatgaggtctttggtggaccacctataatgttggtctatcttaaatattttgggttaaaattaacagattag 152065  T
Q  207 gaccaatttgactgacgga 225  Q
    |||||| |||  |||||||    
T  152066 gaccaaattggttgacgga 152084  T

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Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 151549 - 151452
Alignment:
Q  104 aaatagatcaaatggttaaaatttaaaaatt-aataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaacg 200  Q
    ||||||||||| ||||||| | ||||||||| ||  || ||| |||| ||| || || ||||||||||||||||  |||||| | |||||||||||||    
T  151549 aaatagatcaattggttaagaattaaaaattgaaccagatctttggttgactacctacaatgttggtccatcttgaacattttaagttaaaattaacg 151452  T

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Target: scaffold0031 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 125137 - 125212
Alignment:
Q  109 gatcaaatggttaaaatttaaaaa--ttaataaggtctatggtagaccacttataatgttggtccatcttatacat 182  Q
    ||||||| |||| ||||| |||||  ||||||||||||||||| |||||||| ||| ||||||||||| |||||||    
T  125137 gatcaaagggtttaaattaaaaaaatttaataaggtctatggtggaccacttttaaggttggtccatcatatacat 125212  T

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Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 22196 - 22125
Alignment:
Q  102 aaaaatagatcaaatggttaaaatttaa-aaattaataaggtctatggtagaccacttataatgttggtcca 172  Q
    ||||||| ||||||||||| ||||| || ||||||||| |||||||||| |||||| || ||||||||||||    
T  22196 aaaaataaatcaaatggtttaaattaaagaaattaatagggtctatggtggaccacctacaatgttggtcca 22125  T

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Target: scaffold0122 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 16126 - 16065
Alignment:
Q  133 ttaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaa 194  Q
    ||||||||||||||||| |||||  ||||| |||||| ||||||| |||||| |||||||||    
T  16126 ttaataaggtctatggtggaccatctataaagttggttcatcttagacatttaaggttaaaa 16065  T

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Target: scaffold0201 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 21337 - 21245
Alignment:
Q  108 agatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    |||||||| |||||||||||| ||||||||| | ||||||||| |||||||   || ||||||||| | || ||||||| ||||||| |||||    
T  21337 agatcaaacggttaaaatttaaaaaattaatgaagtctatggtggaccactctgaaggttggtccaccatagacatttgtggttaaacttaac 21245  T

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Target: scaffold0077 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 52805 - 52709
Alignment:
Q  104 aaatagatcaaatggttaaaattta-aaaattaataaggtctatggtagaccacttataatgttggtccatcttatacatttgaggttaaaattaac 199  Q
    ||||||||| || || ||||||| | |||||||||||||||||   ||||||| || ||| ||||||||| | ||||||||| | |||||| |||||    
T  52805 aaatagatcgaacggataaaattaagaaaattaataaggtctaccatagaccatttttaaggttggtccaccatatacatttaaagttaaagttaac 52709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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