View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_4 (Length: 602)
Name: NF20905_low_4
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 361 - 591
Target Start/End: Complemental strand, 42518545 - 42518315
Alignment:
| Q |
361 |
tcaagcaggtacacgtactttactttctcgctcacaagnnnnnnnnnnnnnnnnnntctagtagacactgatggtttttatacagcagctttaagctttt |
460 |
Q |
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| T |
42518545 |
tcaagcaggtacacgtactttactttctcgctcacaagacacacacacacacactctctagtagacactgatggtttttatacagcagctttaagctttt |
42518446 |
T |
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| Q |
461 |
ccactgtctctctctatgtctgaagtaaattcacaacgtgaagattcacgaagacagaacagaaacaacttttttagcagttaaattattaccacgttat |
560 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518445 |
ccactgtctctctctatgtctgaagtaaattcacaacgtgaagattcacgaagacagaacagaaacaacttttttagcagttaaattattaccacgttat |
42518346 |
T |
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| Q |
561 |
ttgttatggacactttatttatttgcctttg |
591 |
Q |
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| T |
42518345 |
ttgttatggacactttatttatttgtctttg |
42518315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 42518880 - 42518708
Alignment:
| Q |
18 |
aaatttcacataacagaacaaaattttccaacaattaaaaatccggatctggattaattggtatcgaaaatgcaaactgcatggtaatatggtatgaact |
117 |
Q |
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| T |
42518880 |
aaatttcacataacagaacaaaattttccaacaattaaaaatccggatctggattaattggtatcgaaaatgcaaactgcatggtt--------tgaact |
42518789 |
T |
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| Q |
118 |
tggaatttgaaagcttacatataaaatattttagctgagaaactctatgataaaatttcagctatgcatgcatagtttaac |
198 |
Q |
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| T |
42518788 |
tggaatttgaaagcttacatataaaatattttagctgagaaactctatgataaaatttcagctatgcatgcatagtttaac |
42518708 |
T |
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