View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_41 (Length: 251)
Name: NF20905_low_41
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_41 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 49170570 - 49170814
Alignment:
| Q |
7 |
gtgagatgaaatgcattcaggaacaaaatttgggtatttccagtttattttgtcctctgataactgcaaaacatatacaaaaataagatttgtgaactac |
106 |
Q |
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| T |
49170570 |
gtgagatgaaatgcattcaggaacaaaatttgggtatttccagtttattttgtcctctgataactgcaaaacatatacaaaaataagatttgtgaactac |
49170669 |
T |
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| Q |
107 |
agtcaaagtaaagaaggaacaaaatcaatccacaaacataagaaaccttcagaataagaagaatttgaagcttggggcaatgctgaagcacttccattac |
206 |
Q |
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| T |
49170670 |
agtcaaagtaaagaaggaacaaaaacaatccacaaacataagaaaccttcagaataagaagaatttgaagcttggggcaatgctgaagcacttccattac |
49170769 |
T |
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| Q |
207 |
atgatcccaatggtgaaagtaaaacatgcttaattgaaggttgat |
251 |
Q |
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| T |
49170770 |
atgatcccaatggtgaaagtaaaacatgcttaattgaaggttgat |
49170814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 49179556 - 49179317
Alignment:
| Q |
7 |
gtgagatgaaatgcattcaggaacaaaatttgggtatttccagtttattttgtcctctgataactgcaaaacatatacaaaaataagatttgtgaactac |
106 |
Q |
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| T |
49179556 |
gtgagacgaaatgcattcaggaacaaaatttgggtatttccaattaatattgtcgggtgacagctgcaaaacatatacaaaaataagatttgtgaaatac |
49179457 |
T |
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| Q |
107 |
agtcaaagtaaagaaggaacaaaatcaatccacaaacataagaaaccttcagaataagaagaatttgaagcttggggcaatgctgaagcacttccattac |
206 |
Q |
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| T |
49179456 |
agtcgaagtaaagaaggaacaaaaacaatccacaaacataagaaaccttattaattctgagaacttgaatattagggcaatgctgaagcacttccattac |
49179357 |
T |
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| Q |
207 |
atgatcccaatggtgaaagtaaaacatgcttaattgaagg |
246 |
Q |
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| T |
49179356 |
atgatcccagtgatgaaagttatacatgcataattgaagg |
49179317 |
T |
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