View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20905_low_43 (Length: 250)
Name: NF20905_low_43
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_43 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 80 - 235
Target Start/End: Original strand, 49170918 - 49171073
Alignment:
| Q |
80 |
aaatttaaaaccatgttgcaatttaaatggtaacgtaacttacagtgagtgataaaaattcgacattatgaattgctctaaatggaacatcgcatacatt |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49170918 |
aaatttaaaaccatgttgcaatttaaatggtaacgtaacttacagtgagtgataaaaattcgacattatgaattgctctaaacggaacatcgcatacatt |
49171017 |
T |
|
| Q |
180 |
gattttggctctaatcaacttggataagattttaaactctcctgtggcagtggctg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49171018 |
gattttggctctaatcaacttggataagattttaaactctcctgtggcagtggctg |
49171073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 49170803 - 49170891
Alignment:
| Q |
1 |
ttgaaggttgattaagtctcgaaatataggagagcctctgttatagaaattgatctctggattagtaagcctgctcatgaaatttaaaa |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
49170803 |
ttgaaggttgattaagtctcgaaatataggagagcctctgttatagaaattgatctctggatcagtaagcctgctcatgaaattcaaaa |
49170891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 107 - 234
Target Start/End: Complemental strand, 49179178 - 49179051
Alignment:
| Q |
107 |
tggtaacgtaacttacagtgagtgataaaaattcgacattatgaattgctctaaatggaacatcgcatacattgattttggctctaatcaacttggataa |
206 |
Q |
| |
|
||||||| |||||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| | ||||||||| |||| |||||||||| ||| |
|
|
| T |
49179178 |
tggtaacttaacttacagtgagtgctaaaaactcgacattgtgaattgctctaaacggaacctcgtctgcattgatttgaactctgatcaacttgggtaa |
49179079 |
T |
|
| Q |
207 |
gattttaaactctcctgtggcagtggct |
234 |
Q |
| |
|
||||||||||||||| ||||| |||||| |
|
|
| T |
49179078 |
gattttaaactctccagtggcggtggct |
49179051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 49179323 - 49179249
Alignment:
| Q |
1 |
ttgaaggttgattaagtctcgaaatataggagagcctctgttatagaaattgatctctggattagtaagcctgct |
75 |
Q |
| |
|
||||||| ||||| || |||||||||||||||| | |||||||| |||||||||| |||| || ||||||||| |
|
|
| T |
49179323 |
ttgaaggaggattaggtttcgaaatataggagagagtatgttataggaattgatctccggatcaggaagcctgct |
49179249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University