View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_45 (Length: 246)
Name: NF20905_low_45
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_45 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 14970308 - 14970536
Alignment:
| Q |
18 |
caatcaacccctttttgcgagcataggcaactatgattagaaatatagaaatggaaaaaattcctggaaaaataaccacctgccaatagaaaagatatac |
117 |
Q |
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| T |
14970308 |
caatcaacccctttttgcgagcataggcaactatgattagaaatatagaaatggaaaaaaatcctggaaaaataaccacctgccaatagaaaagatatac |
14970407 |
T |
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| Q |
118 |
catattctttatatcgaaaatctcatttgaaaattgcataaagaaaacattgtttaattgtagttacccatttgaacatgtaaccatggtcttttgtcca |
217 |
Q |
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| T |
14970408 |
catattctttatatcgaaaatctcatttgaaaattgcataaagaaaacattgttcaattgtagttacccatttgaacatgtaaccatggtcttttgtcca |
14970507 |
T |
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| Q |
218 |
agtaaatggaatattcatgctaaatattc |
246 |
Q |
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| T |
14970508 |
agtaaatggaatattcatgctaaatattc |
14970536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 14987423 - 14987504
Alignment:
| Q |
29 |
tttttgcgagcataggcaactatgattagaaatatagaaatggaaaaaattcctggaaaaataaccacctgccaatagaaaa |
110 |
Q |
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| T |
14987423 |
tttttgcgagcagaggcaactatggtgagaaatatagatatggaaaaaattcctgtaaaaataaccacctgccaataaaaaa |
14987504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 14987554 - 14987644
Alignment:
| Q |
157 |
aaagaaaacattgtttaa-ttgtagttacccatttgaacatgtaaccatggtcttttgtccaagtaaatggaatattcatgctaaatattc |
246 |
Q |
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| T |
14987554 |
aaaaaaaacattgtttaaattgtggttacccatttgaacatgtaaccatggttgttttcccaaccatatggaatattcatgccaagtattc |
14987644 |
T |
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