View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_46 (Length: 242)
Name: NF20905_low_46
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 412156 - 412365
Alignment:
| Q |
16 |
ttccttcaagttcaacaactacgtacttttgtcccaacatgcagaacatggcctatattagtgtgtgtgagtgagagttttcatttcagtcttaaactaa |
115 |
Q |
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| T |
412156 |
ttccttcaagttcaacaactacgtacttttgtcccaacatgcagaacatggtctatattagtgtgtgtgagtgagagttttcatttcagtcttaaactaa |
412255 |
T |
|
| Q |
116 |
ctcgcaatatttcacatttcatttcattactataaagtaaacattgaaaacctctattcgttatttctctccactcaacaattaatacacacattcaaac |
215 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
412256 |
ctcacaatatttcacatttcatttcattactataaagtaaacattgaaaacctctattcattatttctctccactcaacaattaatacacacattcaaac |
412355 |
T |
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| Q |
216 |
ctctcttcat |
225 |
Q |
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|||||||||| |
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| T |
412356 |
ctctcttcat |
412365 |
T |
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