View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_47 (Length: 241)
Name: NF20905_low_47
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 45318894 - 45318667
Alignment:
| Q |
1 |
cgaagataacgtgaaagaatcttagccggaccttttgtgatagttattccctcgttaggatttgctttcttatcatcatattcagcctcaattttctcag |
100 |
Q |
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| T |
45318894 |
cgaagataacgtgaaagaatcttagccggaccttttgtgatagttattccctcgttaggatttgctttcttatcatcatattcagcctcaattttctcag |
45318795 |
T |
|
| Q |
101 |
gctccacctggttatcagtaggatttgttttcttatcatcatcatcttcagcctcaattttctcagtctctacctggtgaacaataattttctcagactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45318794 |
gctccacctggttatcagtaggatttgttttcttatcatcatcatcttcagcctcaattttctcagtctctacctggtgaacaataattttctcagactc |
45318695 |
T |
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| Q |
201 |
cacctggttaagagtaggcgttgctttc |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
45318694 |
cacctggttaagagtaggcgttgctttc |
45318667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 45318550 - 45318452
Alignment:
| Q |
135 |
atcatcatcatcttcagcctcaattttctcagtctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcatctc |
233 |
Q |
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| T |
45318550 |
atcatcatcatcttcagcctcaattttctcaggctctacctggttaacagtaattttctccgactccacctggttaactgtaggatttgctttcttctc |
45318452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 45318709 - 45318571
Alignment:
| Q |
90 |
aattttctcaggctccacctggttatcagtaggatttgttttcttatcatcatcatcttcagcctcaattttctcagtctctacctggtgaacaataatt |
189 |
Q |
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||||||||||| ||||||||||||| |||||| ||| ||||||||||||||| ||||| |||||||||||||||| ||||| ||||| | || ||||| |
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| T |
45318709 |
aattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttcttcggcctcaattttctcaggctctatctggttaccagtaatt |
45318610 |
T |
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| Q |
190 |
ttctcagactccacctggttaagagtaggcgttgctttc |
228 |
Q |
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|| |||||||||||| |||||| ||||| |||||||| |
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| T |
45318609 |
ttttcagactccaccaggttaactgtaggatttgctttc |
45318571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 45318388 - 45318303
Alignment:
| Q |
102 |
ctccacctggttatcagtaggatttgttttcttatcatcatcatcttcagcctcaattttctcagtctctacctggtgaacaataattt |
190 |
Q |
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|||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||| |
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| T |
45318388 |
ctccacctggtttatagtaggattttttttcttatcatcatc---ttcagcctcaattttctcagactccacctggtaaacaataattt |
45318303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 218
Target Start/End: Complemental strand, 45318499 - 45318368
Alignment:
| Q |
90 |
aattttctcaggctccacctggttatcagtaggatttgttttcttatcatcatcatcttcagcctcaattttctca------gtctctacctggtgaaca |
183 |
Q |
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||||||||| | ||||||||||||| | |||||||||| |||||| ||||||| ||||||||||||||||||| |||||| |||||| ||| |
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| T |
45318499 |
aattttctccgactccacctggttaactgtaggatttgctttctt---ctcatcattttcagcctcaattttctcaggctccgtctctgcctggttaacg |
45318403 |
T |
|
| Q |
184 |
ataattttctcagactccacctggttaagagtagg |
218 |
Q |
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|||||||| ||| ||||||||||||| | |||||| |
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| T |
45318402 |
ataattttttcatactccacctggtttatagtagg |
45318368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 45318470 - 45318421
Alignment:
| Q |
56 |
taggatttgctttcttatcatcatattcagcctcaattttctcaggctcc |
105 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
45318470 |
taggatttgctttcttctcatcattttcagcctcaattttctcaggctcc |
45318421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 45318371 - 45318315
Alignment:
| Q |
56 |
taggatttgctttcttatcatcatattcagcctcaattttctcaggctccacctggt |
112 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
45318371 |
taggattttttttcttatcatcatcttcagcctcaattttctcagactccacctggt |
45318315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 45318547 - 45318499
Alignment:
| Q |
72 |
atcatcatattcagcctcaattttctcaggctccacctggttatcagta |
120 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||| ||||| |
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| T |
45318547 |
atcatcatcttcagcctcaattttctcaggctctacctggttaacagta |
45318499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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