View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20905_low_48 (Length: 241)
Name: NF20905_low_48
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_48 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 40177601 - 40177361
Alignment:
| Q |
1 |
aaaattttagtgtatttcaaatgaaatttgtattgattatgatttttattatgtgtgtcttaagaagaatataatatcattcaatatatgtttatataat |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40177601 |
aaaattttagtgtatttcaaattaaatttttattgattatgatttttattacgtgtgtcttaagaagaatataatatcattcaatatatgtttatataat |
40177502 |
T |
|
| Q |
101 |
tcttgtatttttatttccgtattcaaccatctcttttttgaatatgacaaaaagttttactagttggcaacgtactgatatttggccctccctccctgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40177501 |
tcttgtatttttatttccgtattcaaccatctcttttttgaatatgacaataagttttactagttggcaacgtactgatatttggccctccctccttgtt |
40177402 |
T |
|
| Q |
201 |
gtcattgatcctaatattagttttgcagcagttgtctctgc |
241 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
40177401 |
gtcattgatcctaatattagttttgcatcagttgtgtctgc |
40177361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 40176283 - 40176068
Alignment:
| Q |
1 |
aaaattttagtgtatttcaaatgaaatttgtattgattatgatttttattatgtgtgtcttaagaag---aatataatatcattcaatatatgtttatat |
97 |
Q |
| |
|
||||||||||||||| |||||| || ||| |||||| |||| ||||||||||| || |||||||||| ||| || |||||||||||||| ||| ||| |
|
|
| T |
40176283 |
aaaattttagtgtatatcaaattaattttttattgaatatggtttttattatgagtatcttaagaagtttaattgaagatcattcaatatatatttgtat |
40176184 |
T |
|
| Q |
98 |
aattcttgtatttttatttccgtattcaaccatctcttttttgaatatgacaaaaagttttactagttggcaacgtactgatatttggccctccctccct |
197 |
Q |
| |
|
||||||| || ||||||||||||||||||| ||||| |||| | ||||||| ||||| ||||| |||| ||||||||| ||||| ||||||||||| | |
|
|
| T |
40176183 |
aattcttttacttttatttccgtattcaacaatctcgtttta-agtatgacagaaagtgttacttgttgataacgtactggtatttagccctccctcctt |
40176085 |
T |
|
| Q |
198 |
gttgtcattgatcctaa |
214 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
40176084 |
gttgtcattgatcctaa |
40176068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University