View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_5 (Length: 567)
Name: NF20905_low_5
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 182 - 554
Target Start/End: Complemental strand, 27409235 - 27408863
Alignment:
| Q |
182 |
agccaatgcatgtatgcgcaaatgttttccaatgtatcaaggacctgtattttatatcattgtagagaggtgtgcgttgtgtgtaagttgacttcctaat |
281 |
Q |
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| T |
27409235 |
agccaatgcatgtatgcgcaaatgtttttcaatgtatcaaggacctatattttatatcattgtagagaggtgtgcattgtgtttaagttgacttcctaat |
27409136 |
T |
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| Q |
282 |
ttagtgaaattcaataaaacacaacagttcgttagtgtatgataagtccaataagagtgtaggataagctcatataatctcatatattcatcactgaaat |
381 |
Q |
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| T |
27409135 |
ttagtgaaattcaataaaacacaacagttcgttagtgtatgataagtccaataagagtgtaggataagctcatataagctcatatattcaccactgaaat |
27409036 |
T |
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| Q |
382 |
atgattattcaagaagcatcgttgttcgattgttaacaaggacttagaaatcattcagctaacatgcacctacatactcactatattaaatactggaaaa |
481 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27409035 |
ttgattattcaagaagcatcgttgttcgactgttaacaaggacctgaaaatcattcagctaacaggcacctacatactcactatattaaatactggaaaa |
27408936 |
T |
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| Q |
482 |
taatcttaagaattacgtaatgacactcaattctctcaattttctctcatttctattagatttcatgcttgat |
554 |
Q |
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| T |
27408935 |
taatcttaagaattacgtaatgacactcaattctctcaattttctctcatttctattagatttcatgcttgat |
27408863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 33421459 - 33421624
Alignment:
| Q |
20 |
tcttccaatcactccatttcggcgggattcaccgcgccggttactgcaactactcgccgctagtactggggtccaacacctcctttagtgaccgtcctct |
119 |
Q |
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| T |
33421459 |
tcttccaatcactccatttcggcgggattcaccgggccggttactgcaactactcgccgctagtaccggggtccaacacctccttcagtgaccgtcctcc |
33421558 |
T |
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| Q |
120 |
tgctgagatggctccgcttttcccgggttgtgattacaatcaatggcttattgttatggataagcc |
185 |
Q |
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| T |
33421559 |
tgctgagatggctccgcttttccctggttgtgattacaatcactggcttattattattgataagcc |
33421624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 440
Target Start/End: Complemental strand, 18460134 - 18460087
Alignment:
| Q |
392 |
aagaagcatcgttgttcgattgttaacaaggacttagaaatcattcagc |
440 |
Q |
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| T |
18460134 |
aagaagcatcgttgtccgacagttaacaag-acttagaaatcattcagc |
18460087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 414 - 554
Target Start/End: Complemental strand, 29915446 - 29915306
Alignment:
| Q |
414 |
ttaacaaggacttagaaatcattcagctaacatgcacctacatactcactatattaaatactggaaaataatcttaagaattacgtaatgacactcaatt |
513 |
Q |
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|||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29915446 |
ttaacaaggatctggaaatcattcagctaacaggcacctacatactcactatattaaatactgtaaaataatcttaagaattacgtaatgacactcaatt |
29915347 |
T |
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| Q |
514 |
ctctcaattttctctcatttctattagatttcatgcttgat |
554 |
Q |
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| T |
29915346 |
ctctcaattttctttcatttctattagatttcatgcttgat |
29915306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 3604976 - 3604927
Alignment:
| Q |
389 |
ttcaagaagcatcgttgttcgattgttaacaaggacttagaaatcattca |
438 |
Q |
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| T |
3604976 |
ttcaataagaatcgatgttcgaatgttaacaaggactttgaaatcattca |
3604927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 511 - 550
Target Start/End: Original strand, 6411073 - 6411112
Alignment:
| Q |
511 |
attctctcaattttctctcatttctattagatttcatgct |
550 |
Q |
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| T |
6411073 |
attctctcaattttctctcatttctattagatttcatgct |
6411112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 514 - 561
Target Start/End: Original strand, 6797148 - 6797195
Alignment:
| Q |
514 |
ctctcaattttctctcatttctattagatttcatgcttgatgatgtcc |
561 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||| |||||| |
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| T |
6797148 |
ctctcaattttctctcacttctattagatttcatgctggataatgtcc |
6797195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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