View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_51 (Length: 238)
Name: NF20905_low_51
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 42236141 - 42236305
Alignment:
| Q |
57 |
agagaataccgtaaaggtaattggacaatccaagaaacacttattctcatcacagccaagaaactagacgatgaacgtagactaagaaacacttcaacat |
156 |
Q |
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| T |
42236141 |
agagaataccgtaaaggtaattggacaatccaagaaacacttattctcatcacagccaagaaactagacgatgaacgtagactaagaaacacttcaacat |
42236240 |
T |
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| Q |
157 |
caacctcaactccatcatcctcatcacaagacccaaataggacaccaaacactacacatgtcacc |
221 |
Q |
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| T |
42236241 |
caacctcaactccatcatcatcatcacaagacccaaataggacaccaaacactacacatgtcacc |
42236305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42236085 - 42236117
Alignment:
| Q |
1 |
ccaccgcacaaccaccaccaccacaaccacaac |
33 |
Q |
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| T |
42236085 |
ccaccgcacaaccaccaccaccacaaccacaac |
42236117 |
T |
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