View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20905_low_52 (Length: 238)
Name: NF20905_low_52
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_52 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 40176485 - 40176701
Alignment:
| Q |
1 |
ttaatagacaccttgttggatattaaaaggtacatcataatacactatgagattaattttaatgcattgttaatataaac-nnnnnnnaggatgcagtag |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || | |
|
|
| T |
40176485 |
ttaatagttaccttgttggatattaaaaggtacatcataatacactacgagattaattttaatgcattgttaatataaacttttttttaggatgaaggat |
40176584 |
T |
|
| Q |
100 |
taaatttgtataatg-nnnnnnnacatttatttgaacacttgtatgatgcattgttgatcataacaaattcaatggtattgttccaaacattatcatttt |
198 |
Q |
| |
|
||| ||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||| |||||||||||||||| |
|
|
| T |
40176585 |
caaaattgtaggatgctttttttacatttatttgaacacttgtatgatgtgttgttgatcataacaaatttaacgatattgtttcaaacattatcatttt |
40176684 |
T |
|
| Q |
199 |
gattcttgcaaatactc |
215 |
Q |
| |
|
||| ||| ||||||||| |
|
|
| T |
40176685 |
gatgcttccaaatactc |
40176701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 40177106 - 40177319
Alignment:
| Q |
13 |
ttgttggatattaaaaggtacatcataatacactatgagattaattttaatgcattgttaatataaac-nnnnnnnaggatgcagtagtaaatttgtata |
111 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
40177106 |
ttgttggatattaaaaggtgcatcataatatactacgagattaattttaatgcattgttaatataaacttttttttaggatgcacgagtaaatttgtatg |
40177205 |
T |
|
| Q |
112 |
atgnnnnnnnacatttatttgaacacttgtatgatgcattg----ttgatcataacaaattcaatggtattgttccaaacattatcattttgattcttgc |
207 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||| || ||||||||||||| || ||| ||||| |||||||||| |||| ||| ||| |
|
|
| T |
40177206 |
atgttttttcacatttatttgaacacttgtatgttgcattgtttatttatcataacaaatttaacggtgttgtttcaaacattattatttcgatgcttca |
40177305 |
T |
|
| Q |
208 |
aaatactctataag |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40177306 |
aaatactctataag |
40177319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 40175734 - 40175799
Alignment:
| Q |
156 |
atcataacaaattcaatggtattgttccaaacattatcattttgattcttgcaaatactctataag |
221 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||||||||||| ||| ||| ||||||||| ||||| |
|
|
| T |
40175734 |
atcataacaaattcaacggtattgtttcacacattatcatttcgatgcttccaaatactccataag |
40175799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40177031 - 40177070
Alignment:
| Q |
1 |
ttaatagacaccttgttggatattaaaaggtacatcataa |
40 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
40177031 |
ttaatagataccttgttggatattaaaaggtgcatcataa |
40177070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University