View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_53 (Length: 238)
Name: NF20905_low_53
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_53 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 274976 - 274754
Alignment:
| Q |
17 |
aatataatgtctctatttctttccaatattgttatgtattctcgga-tgcttactatattgtaattaaatcaaacacacctttagactatgccacttatt |
115 |
Q |
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| T |
274976 |
aatataatgtctctatttctttccaatatagttatggattctcggggtacttactatattgtaattaaatcaaacacacctttagactatgccacttatt |
274877 |
T |
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| Q |
116 |
agctaattgagtctaacacttgattagtccaatgaccaaatcaagtttataatctaacaattagactataccacttattagaaatatgaagggacatagt |
215 |
Q |
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| T |
274876 |
agctaattgagtctaacacttgattagtccaatgaccaaatcaagtttataatctaacaattagactacaccacttattagaaatatgaagggacatagt |
274777 |
T |
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| Q |
216 |
catagacaaactagctattttat |
238 |
Q |
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| T |
274776 |
catagacaaactagctattttat |
274754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 15672384 - 15672448
Alignment:
| Q |
111 |
ttattagctaattgagtctaacacttgattagtccaat-gaccaaatcaagtttataatctaaca |
174 |
Q |
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| T |
15672384 |
ttattatctaattgagcctaacacttgattagtccaatgggccaaatcaagtttattatccaaca |
15672448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 4892795 - 4892864
Alignment:
| Q |
107 |
ccacttattagctaattgagtctaacacttgattagtccaat-gaccaaatcaagtttataatctaacaa |
175 |
Q |
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| T |
4892795 |
ccacttattagataattgagcctaacacttgattagtccagtcgaccaaatcaagtttattatccaacaa |
4892864 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 26953904 - 26953963
Alignment:
| Q |
107 |
ccacttattagctaattgagtctaacacttgattagtccaat-gaccaaatcaagtttat |
165 |
Q |
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| T |
26953904 |
ccacttattagataattgggtctaacacttgattagttcaatggaccaaatcaagtttat |
26953963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 3507092 - 3507036
Alignment:
| Q |
108 |
cacttattagctaattgagtctaacacttgattagtccaat-gaccaaatcaagtttat |
165 |
Q |
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| T |
3507092 |
cacttattagcttattgaga--aacacttgattagtccaatggaccaaatcaagtttat |
3507036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 26971720 - 26971766
Alignment:
| Q |
126 |
gtctaacacttgattagtccaatgaccaaatcaagtttataatctaa |
172 |
Q |
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| T |
26971720 |
gtctaacatttgattagtcctatgaccaaatcaagtttataatctaa |
26971766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 3436003 - 3435929
Alignment:
| Q |
107 |
ccacttattagctaattgagtctaacacttgattagtccaat-gaccaaatcaagtttataatctaacaattaga |
180 |
Q |
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| T |
3436003 |
ccacttattagttaattggacttaacacttgattagtccaattgaccaaatcaagtttataatcaaactattaga |
3435929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 36815690 - 36815746
Alignment:
| Q |
107 |
ccacttattagctaattgagtctaacacttgattagtccaat-gaccaaatcaagtt |
162 |
Q |
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| T |
36815690 |
ccacttatttgttaattgggcctaacacttgattagtccaatggaccaaatcaagtt |
36815746 |
T |
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