View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_55 (Length: 235)
Name: NF20905_low_55
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 2685553 - 2685357
Alignment:
| Q |
19 |
atctttagcattactagagaatttgttgtccatcacatctaagaagttgcttagtatatctgaatttcatgaataaataacaaccnnnnnnnnnnnnntt |
118 |
Q |
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| T |
2685553 |
atctttagcattactagagaatttattgtccatcacatctaagaagttgcttagtatatctgaatttcatgaataaataacaaccaaaaaaccaaaaatt |
2685454 |
T |
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| Q |
119 |
agttcctaggttttgataaatttgatgaatatctaattaaaatagatagttaccagatggaaacacattgtatccatgttgccttaaaagcttgaag |
215 |
Q |
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| T |
2685453 |
agttcctaggttttgataaatttgatgaatatctaattaaaatagatagttaccagatggaaaaacattgtatccatgttgccttaaaagcttgaag |
2685357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 2680291 - 2680109
Alignment:
| Q |
22 |
tttagcattactagagaatttgttgtccatcacatctaagaagttgcttagtatatctgaatttcatgaataaataacaaccnnnnnnnnnnnnnttagt |
121 |
Q |
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|||||||| |||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||| | |||| ||||| |
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| T |
2680291 |
tttagcatcactagagaatctgttgtctataacatctaagaagttgcttagtatatctgaatttcatgaatga----caac--------gaaaaattagt |
2680204 |
T |
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| Q |
122 |
tcctaggttttgataaatttgatgaatatctaattaaaatagatagttaccagatggaaacacattgtatccatgt-tgccttaaaagcttgaag |
215 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| |
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| T |
2680203 |
tcctaggttgtgataaatttgatgaatatctaattaaaatagatagttaccagatggaaaaacattgtatccatgtgtgccttaaaagcctgaag |
2680109 |
T |
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