View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_6 (Length: 566)
Name: NF20905_low_6
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 54 - 472
Target Start/End: Complemental strand, 8143154 - 8142743
Alignment:
| Q |
54 |
cacaaacatctccggagtacatatcagactaataagttgtattaggactacaagacaactgtgtcgtaaagatatcagacannnnnnnnccnnnnnnnnt |
153 |
Q |
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| T |
8143154 |
cacaaacatctcgggagtacatatcagactcataagttgtattaggggtacaagacaaccgtgtagtaaagatatcagacatttttttcc--aaaaaaat |
8143057 |
T |
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| Q |
154 |
aaaattaattgttcgatacttccttaatttatatcagccacgtatcaatatcggtatcagatgcatgttggacatgatactttaccatttttaaggtatt |
253 |
Q |
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| T |
8143056 |
aaaattaattgtctgatacttcattgatttatattagccgcatatcagtatcagtatcagatgcgcgttggacatgatactttaccattttaaaggtatt |
8142957 |
T |
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| Q |
254 |
ggggcttcagagtgcatcatttaacccttctattttactagaaagttcattttcatcatcaccatatcctaataactgaggtaacccactttgttaggaa |
353 |
Q |
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| T |
8142956 |
gaggcttcatagtacatcatttaacccttctattttactagaaagttcattttcatcatcaccatatcctaataactgaggtaacccactttgttaggaa |
8142857 |
T |
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| Q |
354 |
ttaaaactatatccaatatttaatgccctttaacaaaagttgactgatgatcagcttgtacctatctgatgatcgactcaatctcttcgcacaaacctta |
453 |
Q |
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| T |
8142856 |
ttaaaactatatccaatatttgatgccctttaacaaaagttgattgatga-----ttgtacctatctgatgatcgactcaatctcttcgcacaaacctta |
8142762 |
T |
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| Q |
454 |
gacaacaccctatacatat |
472 |
Q |
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| T |
8142761 |
gacaacaccctatatatat |
8142743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 469 - 550
Target Start/End: Complemental strand, 8141394 - 8141313
Alignment:
| Q |
469 |
atatgcccaactagagaaatatgacaaaaacctaacaaatcctgagggttattgcttttcgaaatcaacacaataaatgtac |
550 |
Q |
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| T |
8141394 |
atatacccaactagagaaatatgacaaaaacctaacaattcctgagggttattgctttttggaatcaacacaataaatgtac |
8141313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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