View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_7 (Length: 545)
Name: NF20905_low_7
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 14 - 528
Target Start/End: Complemental strand, 45746443 - 45745936
Alignment:
| Q |
14 |
catcaacaaatcacaaaactagttatgattgaaatctaacgttttgaatatgacaataatgaccgattaacaatataatttttcctcctccaaaaaaatc |
113 |
Q |
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| T |
45746443 |
catcaacaaatcacaaaactagttatgattgaaatctaacgttttgaatatgacaataatgaccgattaacaatataatttttcctcctccaaaaaaatc |
45746344 |
T |
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| Q |
114 |
tatataannnnnnnnnnnnnnnnnacattagacaaatgacgattatgattgattgataatataagattgacttacacagggaaagcaaaagaatcagtac |
213 |
Q |
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| T |
45746343 |
tatataattttttttttt------acattagacaaatgacgattatgattgattgataatataagattgacttacacagggaaagcaaaagaatcagtac |
45746250 |
T |
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| Q |
214 |
tgccttcagattggacagagtcccttgattttgcaaatgacatctcatagtcttcaattccctcaacctgcataaaacatattttaattagtcataattc |
313 |
Q |
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| T |
45746249 |
tgccttcagattggacagagtcccttgattttgcaaatgacatctcatagtcttcaattccctcaacctgcataaaacatattttaattagtcataattc |
45746150 |
T |
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| Q |
314 |
tcttattatatcaaagattatgacacggcattgcggccgcgatttaaaaccttagttgcaacacttgaacgcaaacatgaaaaaaggtcaaggttgtgtg |
413 |
Q |
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| T |
45746149 |
tcttattatatcaaagattatgacacggcattgcggccgcgatttaaaaccttagttgcaacacttgaacgcaaacatga-aaaaggtcaaggttgtgtg |
45746051 |
T |
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| Q |
414 |
tggtagggcacctctctacaatcttgatctttttggtcagtaacatgatgatttgtatttgatattttgttatgaatgttgatgttgctaacttggtctg |
513 |
Q |
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| T |
45746050 |
tggtagggcacctctctacaatcttgatctttttggtcagtaacatgatgatttgtatttgatattttgttatgaatgttgatgttgctaacttggtctg |
45745951 |
T |
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| Q |
514 |
catcctcatcatatt |
528 |
Q |
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| T |
45745950 |
catcctcatcatatt |
45745936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 150 - 284
Target Start/End: Complemental strand, 45735053 - 45734919
Alignment:
| Q |
150 |
tgacgattatgattgattgataatataagattgacttacacagggaaagcaaaagaatcagtactgccttcagattggacagagtcccttgattttgcaa |
249 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||| ||||| |
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| T |
45735053 |
tgacgattaggattgattgataatataagattgacttacacaggaaaagcaaaagaatcagtactgccttcagattggacacattcccttgattctgcaa |
45734954 |
T |
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| Q |
250 |
atgacatctcatagtcttcaattccctcaacctgc |
284 |
Q |
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| T |
45734953 |
atgtcatctcatagtcttcaattccctcaacctgc |
45734919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 45735180 - 45735104
Alignment:
| Q |
14 |
catcaacaaatcacaaaactagttatgattgaaatctaacgttttgaatatgacaataatgaccgattaacaatata |
90 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45735180 |
catcaacaaatcccaaaactagttatgattgaaatctaacgttttgaatatgacaataatgaccgattaataatata |
45735104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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