View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20905_low_8 (Length: 474)
Name: NF20905_low_8
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20905_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 35454857 - 35454405
Alignment:
| Q |
18 |
attctaatggatcacgaatccatgattgtaaatttctttatactttctcatattgaatgcaattctaatagaacgtgacatgctcaaatgacaaagacat |
117 |
Q |
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| T |
35454857 |
attctaatagatcacgaatccatgattgtaaatttctttatactttctcatattgaatgcaactctaatataacatgacgtgctcaaatgacagagacat |
35454758 |
T |
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| Q |
118 |
ttcttaacttgtat----tattgccaaaattcaaaatacatatttactgctctggagacttaaaaaagaagagaacttatcttctttattatttaaagtt |
213 |
Q |
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| T |
35454757 |
ttcttaacttgtatgtattattgccaaaattcaaaatacatatttactgttctggagacttaaaaaagaagagaacttatcttctttattatttaaagtt |
35454658 |
T |
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| Q |
214 |
caattgtattannnnnnnnccgactgaaccaagaaaatattctataaggtttggattccagtttatctaatatatcatcaataacggtggattatcattt |
313 |
Q |
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| T |
35454657 |
caattgtaatattttttttccgactgaaccaagaaaatattctataaggtttggattccagtttacctaatatatca---ataacggtggattatcattt |
35454561 |
T |
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| Q |
314 |
ggtatggttgataagtctgctcatggagatatttcaagcattcc-ttgtaatactcataactcaaacatgggtctaaaaaaggaagcagtggggagatga |
412 |
Q |
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| T |
35454560 |
ggtatggttgataagtctgctcatggagatatttcaagcattcccttgtaatactcataactcaaacatgggtctaaaaaaggaagcagtggggcgatga |
35454461 |
T |
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| Q |
413 |
gcatatcagaattttaatattcaagtttt--tctcctcacatatttggtgatgatg |
466 |
Q |
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| T |
35454460 |
gcatatcagaattttaatattcaagtttttctctcctcacatgtttggtgttgatg |
35454405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 385
Target Start/End: Complemental strand, 35441087 - 35441007
Alignment:
| Q |
302 |
ggattatcatttggtatggttgataagtctgctcatggagatatttcaagcattccttgtaatactcataactcaaacatgggt |
385 |
Q |
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| T |
35441087 |
ggatcatcatttggtatggttgatacgtctgctcatggagatattccaagcatgactt---ttactcagaactcaaacatgggt |
35441007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 35449100 - 35449055
Alignment:
| Q |
309 |
catttggtatggttgataagtctgctcatggagatatttcaagcat |
354 |
Q |
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| T |
35449100 |
catttcgtatggttgatatgtctgctcatggagatttttcaagcat |
35449055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 388
Target Start/End: Complemental strand, 51575383 - 51575288
Alignment:
| Q |
293 |
aataacggtggattatcatttggtatggttgataagtctgctcatggagatatttcaagcattccttgtaatactcataactcaaacatgggtcta |
388 |
Q |
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| T |
51575383 |
aatagcggtggttcatcatttggtatggttgatgtgtctcctcgtggtgatatttcaagcatgccttataatactcggaactcaaacatgggtcta |
51575288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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