View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20905_low_9 (Length: 474)

Name: NF20905_low_9
Description: NF20905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20905_low_9
NF20905_low_9
[»] chr6 (2 HSPs)
chr6 (21-462)||(34958852-34959292)
chr6 (26-76)||(9024166-9024216)
[»] chr1 (3 HSPs)
chr1 (21-447)||(3921320-3921741)
chr1 (40-81)||(50233415-50233456)
chr1 (39-75)||(30847723-30847759)
[»] chr4 (5 HSPs)
chr4 (46-76)||(5654601-5654631)
chr4 (30-76)||(22799887-22799933)
chr4 (47-76)||(10546167-10546196)
chr4 (39-76)||(18513244-18513281)
chr4 (39-75)||(31552460-31552496)
[»] chr2 (3 HSPs)
chr2 (49-83)||(31026707-31026741)
chr2 (39-76)||(18570991-18571028)
chr2 (39-75)||(37402087-37402123)
[»] chr7 (2 HSPs)
chr7 (26-75)||(17257979-17258028)
chr7 (51-87)||(25956453-25956489)


Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 21 - 462
Target Start/End: Original strand, 34958852 - 34959292
Alignment:
Q  21 atatggtgtctgacatggcactgatacgtatgattacattgaattatgtcattttcataaatttattgatgtgtccgtttcgtgttcgtgtatgagtttg 120  Q
    ||||| |||| |||| |||||| |||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||    
T  34958852 atatgatgtccgacacggcactaatacgtatgattacattgaattatgtcatttttatgaatt-attgacgtgtccgtttcgtgttcgtgtatgagtttg 34958950  T
Q  121 tgtttcatagtatcaccatattccgaaagcaactcacattccaaaatttcatatggttaaagtcattgattcaggattgtata-aaaaagtgcatgacat 219  Q
    ||||||||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| | |||||||||| |||||    
T  34958951 tgtttcatagtattaccatattccaaaagcaacttacatttcaaaatttcatatggttaa-gtcattgattcaggattgtacacaaaaagtgcaggacat 34959049  T
Q  220 attaacaagtgcgcctcatcaac----aatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgtgcacattgattgaaactata 315  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||    
T  34959050 attaacaagtgcgcctcatcaacgtacaatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgtgcacattg----aaactata 34959145  T
Q  316 ttaatcatctctcaaagttcaaagaaattggcttcaaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgatgcatgcattttatttt 415  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34959146 ttaatcatctctcaaagttcttagaaattggcttcaaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgatgcatgcattttatttt 34959245  T
Q  416 aaagatatgattcatttacatttcactcttgtatataacttcatctc 462  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  34959246 aaagatatgattcatttgcatttcactcttgtatataacttcgtctc 34959292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 9024166 - 9024216
Alignment:
Q  26 gtgtctgacatggcactgatacgtatgattacattgaattatgtcattttc 76  Q
    ||||| |||| | |||||| || ||||||||||||||||||||||||||||    
T  9024166 gtgtccgacacgacactgacacatatgattacattgaattatgtcattttc 9024216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 447
Target Start/End: Complemental strand, 3921741 - 3921320
Alignment:
Q  21 atatggtgtctgacatggcactgatacgtatgattacattgaattatgtcattttcataaatt--tattgatgt------gtccgtttcgtgttcgtgta 112  Q
    |||||||||| |||||| |||||| ||| |||||||||||||||||||||||||||  |||||  |||||||||      ||||||||||||||||||||    
T  3921741 atatggtgtccgacatgacactgacacgcatgattacattgaattatgtcattttctcaaattattattgatgttgacgtgtccgtttcgtgttcgtgta 3921642  T
Q  113 tgagtttgtgtttcatagtatcaccatattccgaaagcaactcacattccaaaatttcatatggttaaagtcattgattcaggattgtata-aaaaagtg 211  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||  |||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  3921641 tgagtttgtgtttcatagtatcaccatattccgaaagtaattcacattcggaaatttcatatggttaaagtcattgattgaggattgtacacaaaaagtg 3921542  T
Q  212 catgacatattaacaagtgcgcctcatcaacaatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgtgcacattgattgaaac 311  Q
     | |||||||||||||||          ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    | |    
T  3921541 taggacatattaacaagt----------aacaatagtacatatttgttgtaactgtgaaacaagtctaagatccagcctcatgtgcacattga----acc 3921456  T
Q  312 tatattaatcatctctcaaagttcaaagaaattggcttcaaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgatgcatgcatttta 411  Q
    |||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3921455 tatattaatcatctctcacagttcaaagaaattggtttcagaaaatgcttttcaaaatctggaaagcttgacctttttggcatatgatgcatgcatttta 3921356  T
Q  412 ttttaaagatatgattcatttacatttcactcttgt 447  Q
    ||||||||||||||||||| | ||||||||||||||    
T  3921355 ttttaaagatatgattcatctgcatttcactcttgt 3921320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 50233456 - 50233415
Alignment:
Q  40 actgatacgtatgattacattgaattatgtcattttcataaa 81  Q
    |||||||  |||||||||||||||||||||||||||| ||||    
T  50233456 actgatatttatgattacattgaattatgtcattttcttaaa 50233415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 30847723 - 30847759
Alignment:
Q  39 cactgatacgtatgattacattgaattatgtcatttt 75  Q
    |||||| || |||||||||||||||||||||||||||    
T  30847723 cactgacacatatgattacattgaattatgtcatttt 30847759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 76
Target Start/End: Original strand, 5654601 - 5654631
Alignment:
Q  46 acgtatgattacattgaattatgtcattttc 76  Q
    |||||||||||||||||||||||||||||||    
T  5654601 acgtatgattacattgaattatgtcattttc 5654631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 22799887 - 22799933
Alignment:
Q  30 ctgacatggcactgatacgtatgattacattgaattatgtcattttc 76  Q
    |||||| | |||||| |||| ||||||||||||||||||||||||||    
T  22799887 ctgacacgacactgacacgtgtgattacattgaattatgtcattttc 22799933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 76
Target Start/End: Complemental strand, 10546196 - 10546167
Alignment:
Q  47 cgtatgattacattgaattatgtcattttc 76  Q
    ||||||||||||||||||||||||||||||    
T  10546196 cgtatgattacattgaattatgtcattttc 10546167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 18513244 - 18513281
Alignment:
Q  39 cactgatacgtatgattacattgaattatgtcattttc 76  Q
    |||||| || ||||||||||||||||||||||||||||    
T  18513244 cactgacacatatgattacattgaattatgtcattttc 18513281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 31552460 - 31552496
Alignment:
Q  39 cactgatacgtatgattacattgaattatgtcatttt 75  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  31552460 cactgatacatatgattacattggattatgtcatttt 31552496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 31026741 - 31026707
Alignment:
Q  49 tatgattacattgaattatgtcattttcataaatt 83  Q
    |||||||||||||||||||||||||||| ||||||    
T  31026741 tatgattacattgaattatgtcattttcttaaatt 31026707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 18571028 - 18570991
Alignment:
Q  39 cactgatacgtatgattacattgaattatgtcattttc 76  Q
    |||||| || ||||||||||||||||||||||||||||    
T  18571028 cactgacacatatgattacattgaattatgtcattttc 18570991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 37402087 - 37402123
Alignment:
Q  39 cactgatacgtatgattacattgaattatgtcatttt 75  Q
    |||||| || |||||||||||||||||||||||||||    
T  37402087 cactgacacatatgattacattgaattatgtcatttt 37402123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 17257979 - 17258028
Alignment:
Q  26 gtgtctgacatggcactgatacgtatgattacattgaattatgtcatttt 75  Q
    |||||||||||| ||| || || ||||||||||||||||||||| |||||    
T  17257979 gtgtctgacatgacaccgacacttatgattacattgaattatgttatttt 17258028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 25956489 - 25956453
Alignment:
Q  51 tgattacattgaattatgtcattttcataaatttatt 87  Q
    ||||||||||||||||||||||||||| || ||||||    
T  25956489 tgattacattgaattatgtcattttcacaattttatt 25956453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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