View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20906_high_3 (Length: 239)
Name: NF20906_high_3
Description: NF20906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20906_high_3 |
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| [»] scaffold0608 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 46933969 - 46934202
Alignment:
| Q |
1 |
cacatgtacgtatatattctcttcatctttcctagttttatttaattctttcaaattaactatgatcaagctatatataaa------------atcataa |
88 |
Q |
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| T |
46933969 |
cacatgtacgtatatattctcttcgtctttcctagttttatttaattctttcaaattaactatgatcaagctatatatatatatatatatataatcataa |
46934068 |
T |
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| Q |
89 |
atgctgacttaaattaatgtgaattatgtttcataggatctatttgttgcgggaacagatacaacagcatccaccctcgaatgggcgatgacagagctta |
188 |
Q |
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| T |
46934069 |
atgctgacttaaattaatgtgaattatgtttcataggatctatttgttgcgggaacagatacaacagcatccaccctcgaatgggcgatgacagagctta |
46934168 |
T |
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| Q |
189 |
tccgcaacccagaagctatgttgaaggccaaaaa |
222 |
Q |
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| T |
46934169 |
tccgcaacccagaagctatgttgaaggccaaaaa |
46934202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 46927231 - 46927314
Alignment:
| Q |
121 |
ataggatctatttgttgcgggaacagatacaacagcatccaccctcgaatgggcgatgacagagcttatccgcaacccagaagc |
204 |
Q |
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| T |
46927231 |
ataggatatatttgttgctggaacggatacaacgacatcaacactagaatgggcaatgacagagcttattcgcaatccagaagc |
46927314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 11106841 - 11106754
Alignment:
| Q |
121 |
ataggatctatttgttgcgggaacagatacaacagcatccaccctcgaatgggcgatgacagagcttatccgcaacccagaagctatg |
208 |
Q |
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| T |
11106841 |
ataggatatatttgttgccggaacagatacaacaacatcaacattagaatgggcaatggcggagcttatcaacaatcctgaagctatg |
11106754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 11112645 - 11112732
Alignment:
| Q |
121 |
ataggatctatttgttgcgggaacagatacaacagcatccaccctcgaatgggcgatgacagagcttatccgcaacccagaagctatg |
208 |
Q |
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| T |
11112645 |
ataggatatatttgttgcgggaacggatactacaacatcaacattagaatgggcaatgacggagcttatcaacaatcctgaagctatg |
11112732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 2276 - 2189
Alignment:
| Q |
121 |
ataggatctatttgttgcgggaacagatacaacagcatccaccctcgaatgggcgatgacagagcttatccgcaacccagaagctatg |
208 |
Q |
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| T |
2276 |
ataggatatatttgttgcgggaacggatactacaacatcaacattagaatgggcaatgacggagcttatcaacaatcctgaagctatg |
2189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 8078 - 8165
Alignment:
| Q |
121 |
ataggatctatttgttgcgggaacagatacaacagcatccaccctcgaatgggcgatgacagagcttatccgcaacccagaagctatg |
208 |
Q |
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| T |
8078 |
ataggatatatttgttgccggaacagatacaacaacatcaacattagaatgggcaatggcggagcttatcaacaatcctgaagctatg |
8165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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