View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20906_high_5 (Length: 210)
Name: NF20906_high_5
Description: NF20906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20906_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 32147062 - 32146868
Alignment:
| Q |
1 |
ccagaccaaccacaatacacacccttaggatacctcaaatttacacaagtaatgctacaatttcgatcgtcatttggacatggca---ctttgcactaat |
97 |
Q |
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| T |
32147062 |
ccagaccaaccgcaatacacacccttaggatacctcaaatttacacaagtgatactacaatttcgatcgtcatttggacatggcagcactttgcactaat |
32146963 |
T |
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| Q |
98 |
actttttgtgcagaaatgtctggttcaaaacaattgataagattttataacttggaaccaaggatggtgataccttggttttaaccttgcctaat |
192 |
Q |
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| T |
32146962 |
actttttgtgaagaaatgtctggttcaaaacaattgatgagattttataacttggaaccaaggttggtgataccttggttttaaccttgcctaat |
32146868 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 42255712 - 42255643
Alignment:
| Q |
20 |
cacccttaggatacctcaaatttacacaagtaatgctacaatttcgatcgtcatttggacatggcactttg |
90 |
Q |
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|||||||| ||||||||||||||| ||||||| |||||| || | |||||||||||||||||| ||||| |
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| T |
42255712 |
cacccttaagatacctcaaatttatgcaagtaacactacaactt-gctcgtcatttggacatggccctttg |
42255643 |
T |
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