View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20906_low_1 (Length: 663)
Name: NF20906_low_1
Description: NF20906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20906_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 223 - 648
Target Start/End: Complemental strand, 29789716 - 29789292
Alignment:
| Q |
223 |
taggatcgtttttgctttgaaaggccattgtcaaagcctatagaactcatccactactaatgaaaagtttttcttcatccaattaacctctttctttcac |
322 |
Q |
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| T |
29789716 |
taggatcgtttttgctttgaaaggccattgtcaaagcctatagaactcatccactactaatgaaaagtttttcttcatccaattaacctctttctttcac |
29789617 |
T |
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| Q |
323 |
cacacaaaacaatatgataggaaagataataatttgtgannnnnnnnnnnngaccctttgattttatttattgcagtgcagctgatccgtcaatagaata |
422 |
Q |
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| T |
29789616 |
cacacaaaacaatatgataggaaagacaataatttgtgattttttttttt-gaccctttgattttatttattgcagtgcagctgatccgtcaatagaata |
29789518 |
T |
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| Q |
423 |
tacactagtgttgcctataaagttataagttattatctctatatcaattcaatggcttatgcataccttaaaaagttccattgatataatggaattgacc |
522 |
Q |
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| T |
29789517 |
tacactagtgttgcctataaagttataagttattatctctatatcaattcaatggcttatgcataccttaaaaagttccattgatataatggaattgacc |
29789418 |
T |
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| Q |
523 |
cttccacttgaatttcttgaattgaccttctaccctttggatagtcatttgtttgttcatttattttttattcaatgttctttgaacctttactatttct |
622 |
Q |
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| T |
29789417 |
cttccacttgaatttcttgaattgaccttctaccctttggatagtcatttgtttgttcatttattttttattcaatgttctttgaacctttactatttct |
29789318 |
T |
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| Q |
623 |
atatctatcaaatttaggttgtatgt |
648 |
Q |
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| T |
29789317 |
atatctatcaaatttaggttgtatgt |
29789292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 29789836 - 29789777
Alignment:
| Q |
105 |
gattacacattactcaaactatatggaccaaaagtgtaattaaacctaataatattatatt |
165 |
Q |
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| T |
29789836 |
gattacacataactcaaactatatggatcaaa-gtgtaattaaacctaataatattatatt |
29789777 |
T |
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