View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20906_low_2 (Length: 335)
Name: NF20906_low_2
Description: NF20906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20906_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 35466354 - 35466031
Alignment:
| Q |
13 |
aatatattaaatataaaaacctataaagcacaagaagtgcgtaataggtaaggaaacaaagtatcaata---tacaccgaataaactgtctatagtttgc |
109 |
Q |
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| T |
35466354 |
aatatattaaatataaaaacctataaagcacaagaagtgcctaataggtaaggaaacaaagtatcaataatatacaccgaataaactgtctaaagtttgc |
35466255 |
T |
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| Q |
110 |
ggttatatattagcgtaaccaagacaaagtgatggattggactatcaagaatgcagatcgtaaaaataatcagatttgtaagcttttaaccaccaccaag |
209 |
Q |
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| T |
35466254 |
ggttatatattagcgtaaccaagacaaagtgacggattggactaccaaaaatgcagatcgtaaaaataatcagatttgtaagcttttaactaccaccatg |
35466155 |
T |
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| Q |
210 |
catggagcttgatgagatcaagaagctaatcctgagagacttatttattgcnnnnnnnttctacaattgcactctttccaaatgacccagatgcagtcca |
309 |
Q |
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| T |
35466154 |
aatggagcttgatgcgatcaagaagctaatcctgagagacttacttattgcaaaaaaattctacagttgcactctttccaaatgacccagatgtagtcca |
35466055 |
T |
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| Q |
310 |
accaaatcatgtgaaagttgaacc |
333 |
Q |
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| T |
35466054 |
accaaatcatgtgaaagttgaacc |
35466031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 13058885 - 13058988
Alignment:
| Q |
116 |
atattagcgtaaccaagacaaagtgatggattggactatcaagaatgcagatcgtaaaaataatcagatttgtaagcttttaaccaccaccaagcatgga |
215 |
Q |
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| T |
13058885 |
atattagcgtaatcaagacaaagtgatatattgaaccatcaagaatgaaaatcgtaaaaacaatcagacttataagcctttaaccaccaccaagaatgga |
13058984 |
T |
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| Q |
216 |
gctt |
219 |
Q |
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|||| |
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| T |
13058985 |
gctt |
13058988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 3310501 - 3310412
Alignment:
| Q |
134 |
caaagtgatggattggactatcaagaatgcagatcgtaaaaataatcagatttgtaagcttttaaccaccaccaagcatggagcttgatg |
223 |
Q |
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|||| ||| |||| |||| | |||||||||| ||||||||||||| ||||||||||| ||||||||||| |||| |||||| |||||| |
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| T |
3310501 |
caaaatgacggatcggaccaccaagaatgcaaatcgtaaaaataacaagatttgtaagtttttaaccaccgccaataatggagattgatg |
3310412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 3310578 - 3310514
Alignment:
| Q |
21 |
aaatataaaaacctataaagcacaagaagtgcgtaataggtaaggaaacaaagtatcaatataca |
85 |
Q |
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|||||||||||| |||||||||||| ||||| ||||| ||| |||||||| |||||| |||||| |
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| T |
3310578 |
aaatataaaaacatataaagcacaataagtgtctaatacgtatggaaacaatgtatcagtataca |
3310514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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