View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20907_high_5 (Length: 467)
Name: NF20907_high_5
Description: NF20907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20907_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 2999885 - 3000291
Alignment:
| Q |
1 |
ctgaaaattctattggtagcacataaatcatat----ctacccccacaacttagtttttgtacttcacccttgttcatatcctctttggctctttgcttc |
96 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2999885 |
ctgaaaattctattggtagcacataaatcatatatatctacccccacaacttagtttttgtacttcacccttgttcatatcctctttggctctttgcttc |
2999984 |
T |
|
| Q |
97 |
ttgaattctattttcacctatgatgtttcgaatgatttggaagttgccttactgaaaaaggaaatgcatctgaggcaaaacattacctcttgatttgacc |
196 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2999985 |
ttgaattctattttcacctatgaagtttcgaatgatttggaagttgccttactgaaaaaggaaatgcatctgaggcaacacattacctcttgatttgacc |
3000084 |
T |
|
| Q |
197 |
tacatttcttttacaaaaactagaaaccaaagcaagatcattttatcttttattagatttatagctacatgaatacacatattctatcaatactgttgta |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3000085 |
tacatttcttttacaaaaactagaaaccaaagcaagatcattttatcttttattagatttatagctacatgaatacacatattctatcaatactgttgta |
3000184 |
T |
|
| Q |
297 |
acagatgtatattacagaatcgattaaagaaattagtattactataataaaaagtgaatgagacagatgaacaag-aaaataggattcattggcagaagt |
395 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
3000185 |
acagatgtatattacagaattgattaaagaaattattattactataataaaaagtgaatgagacagatgaacaagaaaaataggattcgttggcagaagt |
3000284 |
T |
|
| Q |
396 |
taggata |
402 |
Q |
| |
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||||||| |
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| T |
3000285 |
taggata |
3000291 |
T |
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