View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20907_high_6 (Length: 346)

Name: NF20907_high_6
Description: NF20907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20907_high_6
NF20907_high_6
[»] chr2 (6 HSPs)
chr2 (1-345)||(38621803-38622147)
chr2 (16-191)||(22311667-22311849)
chr2 (59-188)||(3960798-3960934)
chr2 (60-127)||(8442687-8442754)
chr2 (57-116)||(26674181-26674240)
chr2 (17-79)||(22311667-22311729)
[»] chr6 (6 HSPs)
chr6 (17-191)||(19238571-19238749)
chr6 (29-105)||(4827379-4827455)
chr6 (43-180)||(18239172-18239315)
chr6 (51-116)||(21917428-21917493)
chr6 (66-109)||(2949253-2949296)
chr6 (158-191)||(2981345-2981378)
[»] chr4 (7 HSPs)
chr4 (23-116)||(8019433-8019526)
chr4 (75-190)||(8019926-8020048)
chr4 (29-105)||(11777922-11777998)
chr4 (135-188)||(8019430-8019483)
chr4 (15-111)||(10699569-10699665)
chr4 (15-111)||(10913339-10913435)
chr4 (60-100)||(37753308-37753348)
[»] chr5 (3 HSPs)
chr5 (42-113)||(19911047-19911118)
chr5 (17-81)||(34821930-34821994)
chr5 (129-185)||(34821936-34821992)
[»] chr1 (3 HSPs)
chr1 (65-191)||(46033981-46034114)
chr1 (65-129)||(12802136-12802200)
chr1 (29-84)||(40339100-40339155)
[»] chr7 (3 HSPs)
chr7 (29-105)||(24536078-24536154)
chr7 (78-115)||(44820409-44820446)
chr7 (56-116)||(46864349-46864409)
[»] chr8 (2 HSPs)
chr8 (18-98)||(17090755-17090835)
chr8 (78-128)||(10682439-10682489)
[»] chr3 (2 HSPs)
chr3 (68-98)||(36494898-36494928)
chr3 (125-190)||(18391945-18392010)


Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 38621803 - 38622147
Alignment:
Q  1 aaagaatatgaattctgagttaagatcttctccatttgctacaataaaaggcaatatccattattatagttttggtgtataaatgttcaattaatgtcat 100  Q
    ||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38621803 aaagaatctgaatttcgagttaagatcttctccatttgctacaataaaaggcaatatccattattatagttttggtgtataagtgttcaattaatgtcat 38621902  T
Q  101 atattttagaaatatgcacatttatatttacagcaaaactatagtaaaggaaattgacatttattatagcaaatggagaggatctcaactcctgacttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38621903 atattttagaaatatgcacatttatatttacagcaaaactatagtaaaggaaattgacatttattatagcaaatggagaggatctcaactcctgacttcc 38622002  T
Q  201 ataaatctatttggatgatagttcaaatttgcgtgaaaaattggtttgttggtttgatgcggaaatagtttcgtaggaaacctaaaatgaagaacctata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38622003 ataaatctatttggatgatagttcaaatttgcgtgaaaaattggtttgttggtttgatgcggaaatagtttcgaaggaaacctaaaatgaagaacctata 38622102  T
Q  301 gcatttatagaaatatcatgaatatcagttaaagtgacaacttct 345  Q
    | |||||||||||||||||||||||||||||||||||||||||||    
T  38622103 gaatttatagaaatatcatgaatatcagttaaagtgacaacttct 38622147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 22311849 - 22311667
Alignment:
Q  16 tgagttaagatcttctccatttgctacaataaaaggcaatatccattattatagttttggtgtataaatgttcaattaatgtcatatattttagaaatat 115  Q
    |||||| ||||| || ||||||| |||||||||  ||||| ||||||| ||| ||||||||||||||||||  ||||||||||||||||| || ||||||    
T  22311849 tgagttgagatcctcaccatttgttacaataaatcgcaatgtccattactatcgttttggtgtataaatgtataattaatgtcatatattctaaaaatat 22311750  T
Q  116 gcacattta-------tatttacagcaaaactatagtaaaggaaattgacatttattatagcaaatggagaggatctcaactc 191  Q
    |  ||||||       ||||||||  ||||||||||||| ||| ||||  ||||||| ||||||||| |||||||||||||||    
T  22311749 gtgcatttatatcatttatttacacgaaaactatagtaatggacattgcaatttattgtagcaaatgaagaggatctcaactc 22311667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 3960798 - 3960934
Alignment:
Q  59 cattattatagttttggtgtataaatgttcaattaatgtcatatattttagaaatatgcacattta-------tatttacagcaaaactatagtaaagga 151  Q
    ||||| |||| ||||||||||||||| |||||||||||||| ||||| ||||||| ||  ||||||       |||||||  |||||||||||||| |||    
T  3960798 cattactatatttttggtgtataaatattcaattaatgtcacatattatagaaatgtgtgcatttatatcatgtatttaccacaaaactatagtaatgga 3960897  T
Q  152 aattgacatttattatagcaaatggagaggatctcaa 188  Q
     |||  |||||||  ||| ||||||||||||||||||    
T  3960898 cattatcatttatcgtagaaaatggagaggatctcaa 3960934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 8442754 - 8442687
Alignment:
Q  60 attattatagttttggtgtataaatgttcaattaatgtcatatattttagaaatatgcacatttatat 127  Q
    ||||||||| ||||| |||||||||||| || |||||||| ||||| || ||| ||| ||||||||||    
T  8442754 attattataattttgttgtataaatgtttaaataatgtcacatattctaaaaaaatgtacatttatat 8442687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 26674240 - 26674181
Alignment:
Q  57 tccattattatagttttggtgtataaatgttcaattaatgtcatatattttagaaatatg 116  Q
    ||||||| |||||||||||||||||||| |   |||||||||||  ||||||||||||||    
T  26674240 tccattaatatagttttggtgtataaatctatgattaatgtcatcaattttagaaatatg 26674181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 22311667 - 22311729
Alignment:
Q  17 gagttaagatcttctccatttgctacaataaaaggcaatatccattattatagttttggtgta 79  Q
    ||||| ||||| ||| ||||||||||||||||  ||||| ||||||| ||||||||| |||||    
T  22311667 gagttgagatcctcttcatttgctacaataaattgcaatgtccattactatagttttcgtgta 22311729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 19238749 - 19238571
Alignment:
Q  17 gagttaagatcttctccatttgctacaataaaaggcaatatccattattatagttttggtgtataaatgttcaattaatgtcatatattttagaaatatg 116  Q
    ||||| ||||| ||||| ||| |||||||||| |  ||||| ||||| |||||||||||||||||||||| |||||||||||||||||| | ||||||||    
T  19238749 gagttgagatcctctccttttcctacaataaatgataatattcattactatagttttggtgtataaatgtccaattaatgtcatatattatggaaatatg 19238650  T
Q  117 cacattta-------tatttacagcaaaactatagtaaaggaaattgacatttattatagcaaatggagaggatctcaactc 191  Q
      ||||||       ||||||||  ||||||   |||| ||| |||| |||||||||||| |||||||||||||||||||||    
T  19238649 tgcatttatatcatgtatttacacaaaaact---gtaatggatattgtcatttattatagaaaatggagaggatctcaactc 19238571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 4827455 - 4827379
Alignment:
Q  29 tctccatttgctacaataaaaggcaatatccattattatagttttggtgtataaatgttcaattaatgtcatatatt 105  Q
    |||||||||||||||||||| |  |||||| |||||| |||||||| | ||||||||||||||||||||||||||||    
T  4827455 tctccatttgctacaataaatgaaaatatctattattgtagttttgatttataaatgttcaattaatgtcatatatt 4827379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 43 - 180
Target Start/End: Original strand, 18239172 - 18239315
Alignment:
Q  43 aataaaaggcaatatccattattatagttttggtgtataaatgttcaattaatgtcatatattttagaaatatgcacattta-------tatttacagca 135  Q
    |||||| | |||||||||||| ||||||||| |||||||||||||||| |||||||||||||| || ||||| |  ||||||       |||||||| ||    
T  18239172 aataaatgacaatatccattactatagttttagtgtataaatgttcaaataatgtcatatattctaaaaatacgtgcatttatataatgtatttaca-ca 18239270  T
Q  136 aaactatagtaaaggaaattgacatttattatagcaaatggagag 180  Q
    ||| |||||||| ||| |||| |||||||| ||| ||||||||||    
T  18239271 aaaatatagtaatggatattgtcatttattgtagaaaatggagag 18239315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 21917493 - 21917428
Alignment:
Q  51 gcaatatccattattatagttttggtgtataaatgttcaattaatgtcatatattttagaaatatg 116  Q
    ||||| ||||||| ||||| ||||||||||||||||  ||||||||||| ||||| ||||||||||    
T  21917493 gcaatgtccattactatagatttggtgtataaatgtctaattaatgtcacatattctagaaatatg 21917428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 2949253 - 2949296
Alignment:
Q  66 atagttttggtgtataaatgttcaattaatgtcatatattttag 109  Q
    |||||||| ||| ||||||||||||||||||| |||||||||||    
T  2949253 atagttttagtgaataaatgttcaattaatgttatatattttag 2949296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 2981345 - 2981378
Alignment:
Q  158 catttattatagcaaatggagaggatctcaactc 191  Q
    ||||||||||||||||||||||| ||||||||||    
T  2981345 catttattatagcaaatggagagaatctcaactc 2981378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 8019433 - 8019526
Alignment:
Q  23 agatcttctccatttgctacaataaaaggcaatatccattattatagttttggtgtataaatgttcaattaatgtcatatattttagaaatatg 116  Q
    ||||| ||||||||| ||| ||||||  ||||||||||||| ||||||||| | |||||||| |||||||||||||||||||| ||||||||||    
T  8019433 agatcctctccatttcctataataaatagcaatatccattactatagtttttgggtataaatattcaattaatgtcatatattctagaaatatg 8019526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 8019926 - 8020048
Alignment:
Q  75 gtgtataaatgttcaattaatgtcatatattttagaaatatgcacattta-------tatttacagcaaaactatagtaaaggaaattgacatttattat 167  Q
    |||||||||| |||||||||||||||||||| ||||||||||  ||||||       |||||||| |||||||||||||| | | |||| |||||||| |    
T  8019926 gtgtataaatattcaattaatgtcatatattctagaaatatgtgcatttatatcatgtatttacatcaaaactatagtaatgaacattgccatttatttt 8020025  T
Q  168 agcaaatggagaggatctcaact 190  Q
    || |||| |||||||||||||||    
T  8020026 agaaaattgagaggatctcaact 8020048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 11777998 - 11777922
Alignment:
Q  29 tctccatttgctacaataaaaggcaatatccattattatagttttggtgtataaatgttcaattaatgtcatatatt 105  Q
    ||||||||| ||| ||||||  |||||||| |||| |||| |||| ||||||||||||  |||||||||||||||||    
T  11777998 tctccatttcctataataaattgcaatatcaattactataattttagtgtataaatgtctaattaatgtcatatatt 11777922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 8019483 - 8019430
Alignment:
Q  135 aaaactatagtaaaggaaattgacatttattatagcaaatggagaggatctcaa 188  Q
    ||||||||||||| ||| ||||  ||||||||||| ||||||||||||||||||    
T  8019483 aaaactatagtaatggatattgctatttattataggaaatggagaggatctcaa 8019430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 10699665 - 10699569
Alignment:
Q  15 ctgagttaagatcttctccatttgctacaataaaaggcaatatccattattatagttttggtgtataaatgttcaattaatgtcatatattttagaa 111  Q
    |||||||  |||| ||||||||| |||||||||| ||| |  | ||||| ||||||||| ||||| |||| || ||||||||||| ||||| |||||    
T  10699665 ctgagttctgatcctctccatttcctacaataaatggccaagtacattactatagttttagtgtacaaatatttaattaatgtcacatattatagaa 10699569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 10913435 - 10913339
Alignment:
Q  15 ctgagttaagatcttctccatttgctacaataaaaggcaatatccattattatagttttggtgtataaatgttcaattaatgtcatatattttagaa 111  Q
    |||||||  |||| ||||||||| |||||||||| ||| |  | ||||| ||||||||| ||||| |||| || ||||||||||| ||||| |||||    
T  10913435 ctgagttctgatcctctccatttcctacaataaatggccaagtacattactatagttttagtgtacaaatatttaattaatgtcacatattatagaa 10913339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 37753308 - 37753348
Alignment:
Q  60 attattatagttttggtgtataaatgttcaattaatgtcat 100  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  37753308 attattattgttttggtgtataaatattcgattaatgtcat 37753348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 19911047 - 19911118
Alignment:
Q  42 caataaaaggcaatatccattattatagttttggtgtataaatgttcaattaatgtcatatattttagaaat 113  Q
    |||||||  |||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||    
T  19911047 caataaagagcaatatccattattataattttggtgtataaatgtttaattaatgtcatatattctagaaat 19911118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 34821930 - 34821994
Alignment:
Q  17 gagttaagatcttctccatttgctacaataaaaggcaatatccattattatagttttggtgtata 81  Q
    |||| |||||| ||||||||| ||| |||||| | |||| | ||||| |||||||||||||||||    
T  34821930 gagtaaagatcctctccattttctaaaataaatgacaattttcattagtatagttttggtgtata 34821994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 34821992 - 34821936
Alignment:
Q  129 tacagcaaaactatagtaaaggaaattgacatttattatagcaaatggagaggatct 185  Q
    |||| |||||||||| ||| | |||||| |||||||| ||| |||||||||||||||    
T  34821992 tacaccaaaactatactaatgaaaattgtcatttattttagaaaatggagaggatct 34821936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 46034114 - 46033981
Alignment:
Q  65 tatagttttggtgtataaatgttcaattaatgtcatatattttagaaatatgcacattta-------tatttacagcaaaactatagtaaaggaaattga 157  Q
    |||||||||| |||||||||||| ||||||| ||||||||| |||||||| |  ||||||       |||||||| | |||||||| ||| ||| |||      
T  46034114 tatagttttgatgtataaatgtttaattaatatcatatattctagaaataggtgcatttatatcatgtatttacatcgaaactataataatggatattat 46034015  T
Q  158 catttattatagcaaatggagaggatctcaactc 191  Q
    |||||||||||||||||  |||||||||||||||    
T  46034014 catttattatagcaaataaagaggatctcaactc 46033981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 12802136 - 12802200
Alignment:
Q  65 tatagttttggtgtataaatgttcaattaatgtcatatattttagaaatatgcacatttatattt 129  Q
    ||||||||||||||||||||||  ||||||||||  | ||||||||||||||  |||||||||||    
T  12802136 tatagttttggtgtataaatgtctaattaatgtctcaaattttagaaatatgtgcatttatattt 12802200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 40339155 - 40339100
Alignment:
Q  29 tctccatttgctacaataaaaggcaatatccattattatagttttggtgtataaat 84  Q
    ||||||||| ||| |||||| | ||||||||||||||||||||||| |||||||||    
T  40339155 tctccattttctaaaataaatgacaatatccattattatagttttgatgtataaat 40339100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 24536154 - 24536078
Alignment:
Q  29 tctccatttgctacaataaaaggcaatatccattattatagttttggtgtataaatgttcaattaatgtcatatatt 105  Q
    ||||||||| ||| |||||| |||||  ||||| | |||||||||||||||||||| |||||||||||||| |||||    
T  24536154 tctccatttcctataataaatggcaaagtccatcactatagttttggtgtataaatattcaattaatgtcacatatt 24536078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 44820446 - 44820409
Alignment:
Q  78 tataaatgttcaattaatgtcatatattttagaaatat 115  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  44820446 tataaatcttcaattaatgtcatatattctagaaatat 44820409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 46864349 - 46864409
Alignment:
Q  56 atccattattatagttttggtgtataaatgttcaattaatgtcatatattttagaaatatg 116  Q
    ||||||||||||| |||| |||||||||| |  ||||||||||| ||||| || |||||||    
T  46864349 atccattattataatttttgtgtataaatatctaattaatgtcacatattctaaaaatatg 46864409  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 17090755 - 17090835
Alignment:
Q  18 agttaagatcttctccatttgctacaataaaaggcaatatccattattatagttttggtgtataaatgttcaattaatgtc 98  Q
    |||| ||||||||||||||   ||||||||| ||  || |  ||||||||||||||| ||||||||||| |||||||||||    
T  17090755 agttgagatcttctccattacttacaataaatggacatttttattattatagttttgatgtataaatgtccaattaatgtc 17090835  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 10682489 - 10682439
Alignment:
Q  78 tataaatgttcaattaatgtcatatattttagaaatatgcacatttatatt 128  Q
    ||||||||||||| |||||| ||| |||||||||||||  |||||||||||    
T  10682489 tataaatgttcaaataatgttataaattttagaaatatatacatttatatt 10682439  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 98
Target Start/End: Original strand, 36494898 - 36494928
Alignment:
Q  68 agttttggtgtataaatgttcaattaatgtc 98  Q
    |||||||||||||||||||||||||||||||    
T  36494898 agttttggtgtataaatgttcaattaatgtc 36494928  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 18391945 - 18392010
Alignment:
Q  125 tatttacagcaaaactatagtaaaggaaattgacatttattatagcaaatggagaggatctcaact 190  Q
    |||||||  |||||||||||||| ||   ||| |||||||||||| |||||||||| |||||||||    
T  18391945 tatttactacaaaactatagtaatgggttttgccatttattataggaaatggagagaatctcaact 18392010  T

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