View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20907_low_1 (Length: 597)
Name: NF20907_low_1
Description: NF20907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20907_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 489
Target Start/End: Original strand, 28593966 - 28594445
Alignment:
| Q |
16 |
atttcatgatataagaatgttttttgaaattaatatttatattttc------tgtgttgtctttttcgttaagttttagggttggagaggtagtcaataa |
109 |
Q |
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| T |
28593966 |
atttcatgatataagaatgttttttgaaattaatatttatattttactagtatgtgttgtctttttcgttaagttttagggttggagaggtagtcaataa |
28594065 |
T |
|
| Q |
110 |
gtcaaaccttggtaccacnnnnnnnnnnnnnnnnnnctaaacttcaaaattttagcttaaaagaatgaggtcagaacatagaagttagaaaaatagaaag |
209 |
Q |
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| T |
28594066 |
gtcaaaccttggtaccactttttttgttttctttttctaaacttcaaaattt-agcttaaaagaatgaggtcagaacatagaagttagaaaaatagaaag |
28594164 |
T |
|
| Q |
210 |
ttgacaaaagtttcagattttgactttttggaaaaatttgctgaaacaaacgctgccctatttctgtt-caaattgtcttgatagatgcttccaaatatt |
308 |
Q |
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| T |
28594165 |
ttgacaaaagtttcagattttgactttttggaaaaatttgctgaaacaaacgctgccctatttctgttacaaattgtcttgatagatgcttccaaatatt |
28594264 |
T |
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| Q |
309 |
ttcaaccctgtccttctcaatttcaccttttcatccaatgactaaacgacaaaacaagattcacgtttcttcttctcttgaaaacgttatcgtcatacaa |
408 |
Q |
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| T |
28594265 |
ttcaaccctgtccttctcaatttcaccttttcatccaatgactacacgacaaaacaagattcacgtttcttcttctcttgaaaacgttatcgtcatacaa |
28594364 |
T |
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| Q |
409 |
caatcaaatcaataatagtaaaatgtacaccattcatttctaaatttcaacatctnnnnnnnncttataaatttcaacttt |
489 |
Q |
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| T |
28594365 |
caatcaaatcaataatagtaaaatgtacaccattcatttctaaatttcaacctctaaaaaaaacttataaatttcaacttt |
28594445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 477 - 582
Target Start/End: Original strand, 28594457 - 28594562
Alignment:
| Q |
477 |
aaatttcaactttctattttatgtatatcacttggatacaaataaccttaatgcaatgnnnnnnnnnnnnnnnntggcttaagtgaaagtttgatcataa |
576 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28594457 |
aaatttcaactttctattttatgtctatcacttggatacaaataaccttaatgcaatgaaaaataaaacaaatatggcttaagtgaaagtttgatcataa |
28594556 |
T |
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| Q |
577 |
ataagt |
582 |
Q |
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|||||| |
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| T |
28594557 |
ataagt |
28594562 |
T |
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