View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20907_low_10 (Length: 287)
Name: NF20907_low_10
Description: NF20907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20907_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 49 - 271
Target Start/End: Original strand, 38622267 - 38622489
Alignment:
| Q |
49 |
gtagactttctcaaatgaatatacatatatacgtgatgataatagaagagatcaccttggaattatagctaggaagaagagagttaagtttggaatagag |
148 |
Q |
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| T |
38622267 |
gtagactttctcaaatgaatatacatatatacgtgatgataatagaagagatcaccttggaattatagctaggaagaagagagttaagtttggaatagag |
38622366 |
T |
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| Q |
149 |
gatcttcatctgatttctcctatttttctcaacgacctttctttcgactttggtagaagaaggttgacattcttgttgatcatggtccattgaaggcaac |
248 |
Q |
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| T |
38622367 |
gatcttcatctgatttctcctatttttctcaacgacctttctttcgactttggttgaagaaggttgacattcttgttgatcatggtccattgaaggcaac |
38622466 |
T |
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| Q |
249 |
cttgaaatttcttacgataaata |
271 |
Q |
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||||||||||||||||||||||| |
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| T |
38622467 |
cttgaaatttcttacgataaata |
38622489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 110 - 242
Target Start/End: Complemental strand, 38561584 - 38561449
Alignment:
| Q |
110 |
attatagctaggaagaagagagttaagtttggaatagaggatcttcatctgatttctcctatttttctcaacgacctttctttcgactttggt---agaa |
206 |
Q |
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| T |
38561584 |
attatagctagggagaagagagttgagtttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccactttggttgaagaa |
38561485 |
T |
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| Q |
207 |
gaaggttgacattcttgttgatcatggtccattgaa |
242 |
Q |
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| T |
38561484 |
gaaggtcgacctccttgttgattttgatccattgaa |
38561449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 110 - 242
Target Start/End: Complemental strand, 38580800 - 38580665
Alignment:
| Q |
110 |
attatagctaggaagaagagagttaagtttggaatagaggatcttcatctgatttctcctatttttctcaacgacctttctttcgactttggt---agaa |
206 |
Q |
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|||||||||||| |||| |||||| || || ||| ||||||||||||| || |||||||||||||||||||| | ||||||||| |||||||| |||| |
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| T |
38580800 |
attatagctagggagaatagagttgaggttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccactttggttgaagaa |
38580701 |
T |
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| Q |
207 |
gaaggttgacattcttgttgatcatggtccattgaa |
242 |
Q |
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| T |
38580700 |
gaaggttgacctccttgttgattatgatccattgaa |
38580665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 38606016 - 38605870
Alignment:
| Q |
99 |
atcaccttggaattatagctaggaagaagagagttaagtttggaatagaggatcttcatctgatttctcctatttttctcaacgacctttctttcgactt |
198 |
Q |
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|||||||| | |||||||||||| ||||||||||| || || ||| ||||||||||||| || |||||||||||||||||||| | ||||||||| |||| |
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| T |
38606016 |
atcacctttggattatagctagggagaagagagttgaggttagaaaagaggatcttcatttggtttctcctatttttctcaacaatctttctttccactt |
38605917 |
T |
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| Q |
199 |
tggt---agaagaaggttgacattcttgttgatcatggtccattgaa |
242 |
Q |
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|||| |||||||||| ||| | ||||||||| || ||||||||| |
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| T |
38605916 |
tggttgaagaagaaggtcgacctccttgttgattttgatccattgaa |
38605870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 30195279 - 30195179
Alignment:
| Q |
102 |
accttggaattatagctaggaagaagagagttaagtttggaatagaggatcttcatctgatttctcctatttttctcaacgacctttctttcgactttgg |
201 |
Q |
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||||||| ||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||| || ||||| ||||||| | ||||||| ||||||| |
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| T |
30195279 |
accttgggattatagttagggagaagagagttgagtttggagtagaggatcttcatctgatttcttctgtttttttcaacgagccttctttcaactttgg |
30195180 |
T |
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| Q |
202 |
t |
202 |
Q |
| |
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| |
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| T |
30195179 |
t |
30195179 |
T |
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