View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20907_low_14 (Length: 238)

Name: NF20907_low_14
Description: NF20907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20907_low_14
NF20907_low_14
[»] chr6 (3 HSPs)
chr6 (18-238)||(31967872-31968092)
chr6 (18-238)||(31964451-31964670)
chr6 (118-185)||(31958503-31958570)
[»] chr1 (1 HSPs)
chr1 (120-185)||(4549462-4549527)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 31967872 - 31968092
Alignment:
Q  18 atgaggttgaattccttgcctctcaaacatcattattgagggttactttgttttcgcgcagatacgaaattgttagaatttgaaatacctgcagaggaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31967872 atgaggttgaattccttgcctctcaaacatcattattgagggttactttgttttcgcgcagatacgaaattgttagaatttgaaatacctgcagaggaat 31967971  T
Q  118 tgtttggatgggtttatttgagcatatcaattgccataagcatttctgagacagcttgggagagcttaagacatgtccttaagctggttttatcatattt 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31967972 tgtttggatgggtttatttgagcatatcaattgccataagtatttctgagacagcttgggagagcttaagacatgtccttaagctggttttatcatattt 31968071  T
Q  218 tataagctatcaatgtgagct 238  Q
    |||||||||||| ||||||||    
T  31968072 tataagctatcattgtgagct 31968092  T

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Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 31964451 - 31964670
Alignment:
Q  18 atgaggttgaattccttgcctctcaaacatcattattgagggttactttgttttcgcgcagatacgaaattgttagaatttgaaatacctgcagaggaat 117  Q
    ||||||||||| ||||||||||||||| ||||||||| || ||||||||||||||| || |||||||||||||||||||||||||| || |  |||||||    
T  31964451 atgaggttgaaatccttgcctctcaaaaatcattattaagagttactttgttttcgtgcggatacgaaattgttagaatttgaaatgccagttgaggaat 31964550  T
Q  118 tgtttggatgggtttatttgagcatatcaattgccataagcatttctgagacagcttgggagagcttaagacatgtccttaagctggttttatcatattt 217  Q
    |||||| || |||||||||||| ||||  |||||||||||||||||||||||| |||| ||||||||| ||||   ||||||| || ||||| | |||||    
T  31964551 tgtttgaattggtttatttgagtatatatattgccataagcatttctgagacatcttgtgagagcttatgacaaacccttaagttgtttttagcttattt 31964650  T
Q  218 tataagctatcaatgtgagct 238  Q
    ||| |||||||||||||||||    
T  31964651 tat-agctatcaatgtgagct 31964670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 31958503 - 31958570
Alignment:
Q  118 tgtttggatgggtttatttgagcatatcaattgccataagcatttctgagacagcttgggagagctta 185  Q
    ||||||||| ||||||| |||||||||| | |||||||||||||| |||||| | |||||||||||||    
T  31958503 tgtttggattggtttatctgagcatatcgactgccataagcatttgtgagactgattgggagagctta 31958570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 4549462 - 4549527
Alignment:
Q  120 tttggatgggtttatttgagcatatcaattgccataagcatttctgagacagcttgggagagctta 185  Q
    ||||||| || |||||||||  |||| | || |||||||||||||||||| | |||||||||||||    
T  4549462 tttggattggcttatttgagattatctactggcataagcatttctgagactgtttgggagagctta 4549527  T

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